Browse Element(s) Details


OsAffx.13633.1.S1_s_at

Description tigr:9632.m00213
TID=OsAffx.13633.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Subtilase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0306011/11Subtilase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03020OsAffx.13632.1.S1_at11/114+1216992..1220535hypothetical protein
LOC_Os04g03030OsAffx.25936.1.S1_s_at9/114+1223537..1226575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03030OsAffx.25936.7.S1_s_at8/114+1223537..1226575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03030OsAffx.25936.2.S1_x_at4/114+1223537..1226575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03030OsAffx.25936.5.S1_x_at2/114+1223537..1226575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03040Os.10827.1.S1_x_at9/114+1229730..1233017transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03040Os.46055.2.S1_x_at5/114+1229730..1233017transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03050OsAffx.25847.1.S1_at10/114+1235580..1238644Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03060OsAffx.13633.1.S1_at11/114+1241248..1247378Subtilase family protein, expressed
LOC_Os04g03060OsAffx.13633.1.S1_s_at11/114+1241248..1247378Subtilase family protein, expressed
LOC_Os04g03080OsAffx.25853.3.S1_at10/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.29410.1.S1_at8/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.13325.1.S1_at2/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.10155.1.S1_at1/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.29576.5.S1_at1/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.10155.1.S1_x_at1/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03100Os.26445.2.S1_at4/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03100Os.26445.1.A1_at3/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03100OsAffx.18867.1.S1_at1/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13633.1.S1_s_at--778--3191Chr04:1246967..1246991 (25 bp)
CAATGCCGTGTACAAGGCATTCCTC
LOC_Os04g03060
OsAffx.13633.1.S1_s_at--1057--3531Chr04:1247006..1247030 (25 bp)
CATCGAGATGGCTGTTGAGCCGCCA
LOC_Os04g03060
OsAffx.13633.1.S1_s_at--72--8831Chr04:1247032..1247056 (25 bp)
TGTTGGTGTTCTCTAAGGATAGAAA
LOC_Os04g03060
OsAffx.13633.1.S1_s_at--504--5571Chr04:1247053..1247077 (25 bp)
GAAAGGTGCAGAGCTTCAAGGTGAC
LOC_Os04g03060
OsAffx.13633.1.S1_s_at--899--7811Chr04:1247092..1247116 (25 bp)
GGAGGCCAATTCAGGGAGACTATAG
LOC_Os04g03060
OsAffx.13633.1.S1_s_at--1077--1391Chr04:1247108..1247132 (25 bp)
AGACTATAGGTTTGGAAGCTTGGCT
LOC_Os04g03060
OsAffx.13633.1.S1_s_at--720--10851Chr04:1247127..1247151 (25 bp)
TTGGCTTGGCACGATGGTGGTAACC
LOC_Os04g03060
OsAffx.13633.1.S1_s_at--1118--7031Chr04:1247146..1247170 (25 bp)
GTAACCATTGGGTTCGGATCCCCAT
LOC_Os04g03060
OsAffx.13633.1.S1_s_at--259--6411Chr04:1247195..1247219 (25 bp)
GATCTACTCAAAGATCTCCTAATTA
LOC_Os04g03060
OsAffx.13633.1.S1_s_at--553--1271Chr04:1247206..1247230 (25 bp)
AGATCTCCTAATTAATGTGATCGAG
LOC_Os04g03060
OsAffx.13633.1.S1_s_at--787--8671Chr04:1247221..1247245 (25 bp)
TGTGATCGAGATATGCTAGTAGCTA
LOC_Os04g03060
Target Sequence 
CAATGCCGTGTACAAGGCATTCCTCCAACCCCCCGTCGGCATCGAGATGGCTGTTGAGCCGCCAATGTTGGTGTTCTCTA
AGGATAGAAAGGTGCAGAGCTTCAAGGTGACCTTTAAAGTGACGAGGAGGCCAATTCAGGGAGACTATAGGTTTGGAAGC
TTGGCTTGGCACGATGGTGGTAACCATTGGGTTCGGATCCCCATTGCAGTTCGCATCGTGATTGAAGAGATCTACTCAAA
GATCTCCTAATTAATGTGATCGAGATATGCTAGTAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13633.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis