Browse Element(s) Details


OsAffx.25853.3.S1_at

Description tigr:9632.m00215
TID=OsAffx.25853.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0308010/11subtilase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03040Os.10827.1.S1_x_at9/114+1229730..1233017transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03040Os.46055.2.S1_x_at5/114+1229730..1233017transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03050OsAffx.25847.1.S1_at10/114+1235580..1238644Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03060OsAffx.13633.1.S1_at11/114+1241248..1247378Subtilase family protein, expressed
LOC_Os04g03060OsAffx.13633.1.S1_s_at11/114+1241248..1247378Subtilase family protein, expressed
LOC_Os04g03080OsAffx.25853.3.S1_at10/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.29410.1.S1_at8/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.13325.1.S1_at2/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.10155.1.S1_at1/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.29576.5.S1_at1/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.10155.1.S1_x_at1/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03100Os.26445.2.S1_at4/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03100Os.26445.1.A1_at3/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03100OsAffx.18867.1.S1_at1/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03110NANA4+1277545..1281879retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25853.3.S1_at--992--5231Chr04:1253316..1253340 (25 bp)
GAATCAATTGCTGACTTGAACCTTC
LOC_Os04g03080
OsAffx.25853.3.S1_at--747--9731Chr04:1253319..1253343 (25 bp)
TCAATTGCTGACTTGAACCTTCCGT
LOC_Os04g03080
OsAffx.25853.3.S1_at--512--71Chr04:1253322..1253346 (25 bp)
ATTGCTGACTTGAACCTTCCGTCCA
LOC_Os04g03080
OsAffx.25853.3.S1_at--529--5671Chr04:1253366..1253390 (25 bp)
GACATTTCAGGCCATGACGCGCAGC
LOC_Os04g03080
OsAffx.25853.3.S1_at--479--191Chr04:1253369..1253393 (25 bp)
ATTTCAGGCCATGACGCGCAGCGTC
LOC_Os04g03080
OsAffx.25853.3.S1_at--1014--8931Chr04:1253380..1253404 (25 bp)
TGACGCGCAGCGTCACCAATGTCGA
LOC_Os04g03080
OsAffx.25853.3.S1_at--685--5071Chr04:1253386..1253410 (25 bp)
GCAGCGTCACCAATGTCGACCAGGT
LOC_Os04g03080
OsAffx.25853.3.S1_at--272--1611Chr04:1253388..1253412 (25 bp)
AGCGTCACCAATGTCGACCAGGTCA
LOC_Os04g03080
OsAffx.25853.3.S1_at--160--4031Chr04:1253390..1253414 (25 bp)
CGTCACCAATGTCGACCAGGTCAAC
LOC_Os04g03080
OsAffx.25853.3.S1_at--634--8891Chr04:1253453..1253477 (25 bp)
TGAGATGGCTGTCGACCCGTCGGTG
LOC_Os04g03080
OsAffx.25853.3.S1_at--350--8211NONE
GGCAATGAGGAGGAAACTATCTAAT
NONE
Target Sequence 
GAATCAATTGCTGACTTGAACCTTCCGTCCATCGCCATCCCCAACCTCAGGACATTTCAGGCCATGACGCGCAGCGTCAC
CAATGTCGACCAGGTCAACGCCGTGTACAAGGCATTCCTCCAGCCCCCTACTGGTGTTGAGATGGCTGTCGACCCGTCGG
TGTTGGTGTTCAGCGAGGAGAAAAAGGTGCTGAGCTTCAAGGTGAACTTTAAGGCAATGAGGAGGAAACTATCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25853.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis