Browse Element(s) Details


OsAffx.13643.1.S1_at

Description tigr:9632.m00246
TID=OsAffx.13643.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0339011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03340Os.46306.1.S1_x_at4/114+1418260..1420484transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03350NANA4+1425527..1429095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03360OsAffx.13641.1.S1_at11/114+1431183..1432023Jacalin-like lectin domain containing protein
LOC_Os04g03370OsAffx.25862.2.S1_at11/114+1433828..1435758Protein kinase domain containing protein
LOC_Os04g03380OsAffx.13668.1.S1_x_at10/114+1438871..1439586Legume lectins beta domain containing protein
LOC_Os04g03390OsAffx.13643.1.S1_at11/114+1441154..1441815hypothetical protein
LOC_Os04g03400NANA4+1442378..1444203transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03410OsAffx.1674.1.S1_at1/114+1447978..1452114retrotransposon protein, putative, unclassified
LOC_Os04g03420OsAffx.8268.1.S1_at1/114+1454363..1456364retrotransposon protein, putative, unclassified
LOC_Os04g03430OsAffx.13644.1.S1_at11/114+1458180..1459312hypothetical protein
LOC_Os04g03430OsAffx.26961.1.S1_x_at1/114+1458180..1459312hypothetical protein
LOC_Os04g03440OsAffx.13645.1.S1_at11/114+1464899..1468686hypothetical protein
LOC_Os04g03440OsAffx.26663.1.S1_at1/114+1464899..1468686hypothetical protein
LOC_Os04g03440OsAffx.13772.1.S1_at1/114+1464899..1468686hypothetical protein
LOC_Os04g03440OsAffx.14945.1.S1_x_at1/114+1464899..1468686hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13643.1.S1_at--871--11Chr04:1441440..1441464 (25 bp)
ATTGAGGGCACACTTTGTCCTTTAC
LOC_Os04g03390
OsAffx.13643.1.S1_at--497--8692Chr04:1441455..1441479 (25 bp)
TGTCCTTTACACATATGGGCCCCTA
LOC_Os04g03390
OsAffx.13643.1.S1_at--143--4071Chr04:1441572..1441596 (25 bp)
CGAAACCCGTGCCTTTGTGGCAAGG
LOC_Os04g03390
OsAffx.13643.1.S1_at--637--2931Chr04:1441593..1441617 (25 bp)
AAGGCTTTCGCCTCATCGTTTTCGC
LOC_Os04g03390
OsAffx.13643.1.S1_at--340--7291Chr04:1441620..1441644 (25 bp)
GTGCGGTCTTCCGACAAGGTCTACG
LOC_Os04g03390
OsAffx.13643.1.S1_at--111--2911Chr04:1441635..1441659 (25 bp)
AAGGTCTACGCTTGGCGAAATTGGT
LOC_Os04g03390
OsAffx.13643.1.S1_at--239--31Chr04:1441654..1441678 (25 bp)
ATTGGTGTATTCCAAGCCACGGCTT
LOC_Os04g03390
OsAffx.13643.1.S1_at--1088--9332Chr10:777051..777268 (25 bp)
TCGCCCATATGGTTTTCTTTTTGAT
NONE
OsAffx.13643.1.S1_at--821--1235Chr10:777085..777107 (23 bp)
AGTTGCCTCCGGTCTGAGCCTGTTG
NONE
OsAffx.13643.1.S1_at--701--12Chr10:777104..777128 (25 bp)
GTTGCCCAAGTTCTTGGTTTCGGCA
NONE
OsAffx.13643.1.S1_at--714--4993Chr04:1441754..1441778 (25 bp)
GCAGGTTCGGCCGAAGGCTTTCCGT
LOC_Os04g03390
Target Sequence 
ATTGAGGGCACACTTTGTCCTTTACACATATGGGCCCCTATTGGGCTTTAATGGCTTCCCCATCTATTTGCCGAAATCCC
CCGAAGGCGTAGCGGCCCGTTGGGCCTCCGACGGCGAAGTTTGGTATTTCGGCGAAACCCGTGCCTTTGTGGCAAGGCTT
TCGCCTCATCGTTTTCGCCCGTGCGGTCTTCCGACAAGGTCTACGCTTGGCGAAATTGGTGTATTCCAAGCCACGGCTTT
CGCCCATATGGTTTTCTTTTTGATCTTCGCCAGTTGCCTCCGGTCTGAGCCTGTTGCCCAAGTTCTTGGTTTCGGCAGGT
TCGGCCGAAGGCTTTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13643.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis