Browse Element(s) Details


OsAffx.13681.1.S1_at

Description tigr:9632.m00455
TID=OsAffx.13681.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0544011/11hypothetical protein
LOC_Os11g219001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g270961/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g05420OsAffx.13680.1.S1_at4/114+2702440..2708160transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g05420Os.45976.1.S1_x_at1/114+2702440..2708160transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g05430NANA4+2715566..2725255retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g05440OsAffx.13681.1.S1_at11/114+2725880..2726433hypothetical protein
LOC_Os04g05450NANA4+2728427..2732164retrotransposon protein, putative, unclassified
LOC_Os04g05460Os.41695.2.S1_x_at3/114+2734291..2738131hypothetical protein
LOC_Os04g05460Os.41695.3.S1_x_at3/114+2734291..2738131hypothetical protein
LOC_Os04g05460Os.41695.4.S1_x_at1/114+2734291..2738131hypothetical protein
LOC_Os04g05460Os.10266.1.S1_at1/114+2734291..2738131hypothetical protein
LOC_Os04g05460Os.41695.5.S1_x_at1/114+2734291..2738131hypothetical protein
LOC_Os04g05470NANA4+2739856..2746025Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13681.1.S1_at--389--6291Chr04:2725927..2725951 (25 bp)
GATGATTATCATCGCTGTCCTCAAC
LOC_Os04g05440
OsAffx.13681.1.S1_at--286--10431Chr04:2725932..2725956 (25 bp)
TTATCATCGCTGTCCTCAACAACCT
LOC_Os04g05440
OsAffx.13681.1.S1_at--700--9491Chr04:2725958..2725982 (25 bp)
TCTGCCAAGGTCCAGCTTCTATGGA
LOC_Os04g05440
OsAffx.13681.1.S1_at--237--4351Chr04:2725969..2726079 (25 bp)
CCAGCTTCTATGGATAAGGTCTTCT
LOC_Os04g05440
OsAffx.13681.1.S1_at--411--2871Chr04:2726071..2726094 (24 bp)
AAGGTCTTCTTTCTCAGGTTCTCGT
LOC_Os04g05440
OsAffx.13681.1.S1_at--454--3671Chr04:2726078..2726102 (25 bp)
CTTTCTCAGGTTCTCGTGATTCTAA
LOC_Os04g05440
OsAffx.13681.1.S1_at--30--4011Chr04:2726092..2726116 (25 bp)
CGTGATTCTAAGGATTGTCTGCAAT
LOC_Os04g05440
OsAffx.13681.1.S1_at--309--10471Chr04:2726141..2726165 (25 bp)
TTAATAGTCACAACTTTCGGAGGAT
LOC_Os04g05440
OsAffx.13681.1.S1_at--1090--9691Chr04:2726148..2726171 (24 bp)
TCACAACTTTCGGAGGATGAGCAGC
LOC_Os04g05440
OsAffx.13681.1.S1_at--1080--5933Chr11:12092764..12092785 (22 bp)
GAGCAGCAACTCAAACAAGGTGATT
LOC_Os11g21900
OsAffx.13681.1.S1_at--635--6211Chr04:2726375..2726399 (25 bp)
GATGGAAGTTAATGAGCCGTGTTTT
LOC_Os04g05440
Target Sequence 
GATGATTATCATCGCTGTCCTCAACAACCTCTCTGCCAAGGTCCAGCTTCTATGGATAAGGTCTTCTTTCTCAGGTTCTC
GTGATTCTAAGGATTGTCTGCAATGGGAGATGTGTTGTGATAAGATCTTTAATAGTCACAACTTTCGGAGGATGAGCAGC
AACTCAAACAAGGTGATTTTAGAGTGGATGCTTATTATAAGGAGATGGAAGTTAATGAGCCGTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis