Browse Element(s) Details


OsAffx.13757.1.S1_at

Description tigr:9632.m00937
TID=OsAffx.13757.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1064011/11amidase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10600NANA4+5736840..5737397hypothetical protein
LOC_Os04g10610OsAffx.25962.1.S1_at11/114+5738619..5742774SWIM zinc finger family protein
LOC_Os04g10620OsAffx.22947.2.S1_x_at9/114+5745226..5749800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10620OsAffx.22947.1.S1_x_at8/114+5745226..5749800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10620OsAffx.22947.3.S1_x_at7/114+5745226..5749800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10620OsAffx.22947.5.S1_x_at2/114+5745226..5749800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10630OsAffx.25963.1.S1_at10/114+5755640..5759107hypothetical protein
LOC_Os04g10640OsAffx.13757.1.S1_at11/114+5761642..5762419amidase family protein, putative
LOC_Os04g10650Os.49940.1.S1_at11/114+5765594..5768521hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os04g10650Os.31700.4.S1_x_at3/114+5765594..5768521hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os04g10660OsAffx.13758.1.S1_at9/114+5770723..5771269hypothetical protein
LOC_Os04g10680Os.13480.1.S1_at10/114+5782079..5791064Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004040molecular_functionamidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13757.1.S1_at--1084--2231Chr04:5761703..5761727 (25 bp)
AAATTGATCTTGTCGCTATGAAAGC
LOC_Os04g10640
OsAffx.13757.1.S1_at--959--1251Chr04:5762074..5762098 (25 bp)
AGATTTTGGACAGAGCTTTCTTACT
LOC_Os04g10640
OsAffx.13757.1.S1_at--66--5911Chr04:5762086..5762110 (25 bp)
GAGCTTTCTTACTGATTCCCAAAAA
LOC_Os04g10640
OsAffx.13757.1.S1_at--248--1711Chr04:5762111..5762135 (25 bp)
ACCAATGGCATTGGACCCAGGGAGA
LOC_Os04g10640
OsAffx.13757.1.S1_at--768--5811Chr04:5762124..5762148 (25 bp)
GACCCAGGGAGAAAACTGTACTCAA
LOC_Os04g10640
OsAffx.13757.1.S1_at--494--4631Chr04:5762210..5762234 (25 bp)
GCGATTGTCACACCCAACTCTGACG
LOC_Os04g10640
OsAffx.13757.1.S1_at--442--4131Chr04:5762272..5762296 (25 bp)
CGCTGTACCAGCTGGGTATGACAAT
LOC_Os04g10640
OsAffx.13757.1.S1_at--407--5611Chr04:5762291..5762315 (25 bp)
GACAATCAGGGAGTGCCATTTGCTA
LOC_Os04g10640
OsAffx.13757.1.S1_at--677--7651Chr04:5762299..5762323 (25 bp)
GGGAGTGCCATTTGCTATCTGCTTC
LOC_Os04g10640
OsAffx.13757.1.S1_at--206--7591Chr04:5762335..5762359 (25 bp)
GGGCTACGAGCCGAGGCTTATCGAA
LOC_Os04g10640
OsAffx.13757.1.S1_at--923--6191Chr04:5762347..5762371 (25 bp)
GAGGCTTATCGAAATGGCCTATGCT
LOC_Os04g10640
Target Sequence 
AAATTGATCTTGTCGCTATGAAAGCAGAGTTCAAGTTAAGCTTAAATGCTTATTTGTCAGACTTGCTGTACTCCCCAGTT
CGTTCTCTTGCAGATGTCATAGCATTCAACAATGCACATCCTGTGGAGGAGAGGCTTAAAGATTTTGGACAGAGCTTTCT
TACTGATTCCCAAAAAACCAATGGCATTGGACCCAGGGAGAAAACTGTACTCAAGATACTCAAAGAGATATCTACTGATG
TGTTGGAGAAACTGATGAAGAAGCACCAGTTGGATGCGATTGTCACACCCAACTCTGACGCCTCCACCATTTTCGCCATC
GGCGGCATGCCGGCGATCGCTGTACCAGCTGGGTATGACAATCAGGGAGTGCCATTTGCTATCTGCTTCGGTGGATTGAA
GGGCTACGAGCCGAGGCTTATCGAAATGGCCTATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis