Browse Element(s) Details


OsAffx.13771.1.S1_x_at

Description tigr:9632.m01019
TID=OsAffx.13771.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1144011/11F-box protein interaction domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11400Os.26587.1.A1_at11/114+6211642..6212423expressed protein
LOC_Os04g11410Os.45976.1.S1_at2/114+6213345..6216054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11410Os.45976.1.S1_x_at1/114+6213345..6216054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11420Os.46306.1.S1_x_at8/114+6218593..6221501transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11430OsAffx.25981.1.S1_at10/114+6230570..6233423NB-ARC domain containing protein
LOC_Os04g11440Os.52198.1.S1_at11/114+6235994..6238359F-box protein interaction domain containing protein, expressed
LOC_Os04g11440OsAffx.13771.1.S1_x_at11/114+6235994..6238359F-box protein interaction domain containing protein, expressed
LOC_Os04g11450Os.52446.1.S1_at9/114+6242596..6244070F-box domain containing protein, expressed
LOC_Os04g11470OsAffx.13772.1.S1_at11/114+6256254..6258461hypothetical protein
LOC_Os04g11470OsAffx.13772.1.S1_x_at11/114+6256254..6258461hypothetical protein
LOC_Os04g11480OsAffx.10632.1.S1_at2/114+6259780..6262582retrotransposon protein, putative, unclassified
LOC_Os04g11480OsAffx.26189.1.S1_at2/114+6259780..6262582retrotransposon protein, putative, unclassified
LOC_Os04g11480OsAffx.7616.1.S1_at1/114+6259780..6262582retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13771.1.S1_x_at--765--9851Chr04:6237725..6237749 (25 bp)
TACACATTGGGCTCTGGCGATTTGC
LOC_Os04g11440
OsAffx.13771.1.S1_x_at--1138--2371Chr04:6237669..6237693 (25 bp)
AAACGGCGCATCTGTGCTGCTGCAT
LOC_Os04g11440
OsAffx.13771.1.S1_x_at--15--151Chr04:6237593..6237617 (25 bp)
ATTACAGCCGAGTCGTTCCGGTGGA
LOC_Os04g11440
OsAffx.13771.1.S1_x_at--940--1371Chr04:6237539..6237563 (25 bp)
AGAGCGTTTCATGGCCTGTTTGAGA
LOC_Os04g11440
OsAffx.13771.1.S1_x_at--852--6911Chr04:6237508..6237532 (25 bp)
GTATGCTCGGCATGTACTGCTGTGA
LOC_Os04g11440
OsAffx.13771.1.S1_x_at--353--1991Chr04:6237493..6237517 (25 bp)
ACTGCTGTGACGATGGTGCGACATT
LOC_Os04g11440
OsAffx.13771.1.S1_x_at--1009--6971Chr04:6237417..6237441 (25 bp)
GTACCGGGTTGAATTGCCAGTTCTA
LOC_Os04g11440
OsAffx.13771.1.S1_x_at--1012--3451Chr04:6237354..6237378 (25 bp)
CAGTGTGATGGTTTCTTCCGAGGAT
LOC_Os04g11440
OsAffx.13771.1.S1_x_at--641--5851Chr04:6237298..6237322 (25 bp)
GAGCCATGCTCTACATTGGTACTGA
LOC_Os04g11440
OsAffx.13771.1.S1_x_at--212--3011Chr04:6237242..6237266 (25 bp)
AATGACGGCCTCAGTATTACTCCAG
LOC_Os04g11440
OsAffx.13771.1.S1_x_at--130--1371Chr04:6237209..6237233 (25 bp)
AGAGCAAGCCTTGTTCCGCATGCAT
LOC_Os04g11440
Target Sequence 
TACACATTGGGCTCTGGCGATTTGCCGAGGTGCATTGGGTGGCCAGAGGCGGAGGCAAACGGCGCATCTGTGCTGCTGCA
TGGGAGCCTGCATTGGTATAAGAGAATCGAAGATATGATTTTGGCGTTTGACATTACAGCCGAGTCGTTCCGGTGGATGC
GGTCTCCATTCGGCAAGGCGGTGTGGAGAGCGTTTCATGGCCTGTTTGAGATTAATTGTATGCTCGGCATGTACTGCTGT
GACGATGGTGCGACATTTGTAGATATCTGGGTGCTGGAGGATTATGAGAGAGAGGTCTGGTCTCTCAAGTACCGGGTTGA
ATTGCCAGTTCTAGAGATCAGGAGAGAGCTTGATGTGAAGCGTGATCTTTACAGTGTGATGGTTTCTTCCGAGGATGGGG
ATGTGCTTGTGCTGGTTAACTGCAAACGAGCCATGCTCTACATTGGTACTGATGGCAAGCTGTTGGCGAGTTTGCCACAT
GATAATGACGGCCTCAGTATTACTCCAGTGAAGCTTAGAGCAAGCCTTGTTCCGCATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13771.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis