Browse Element(s) Details


OsAffx.13910.1.S1_at

Description tigr:9632.m01999
TID=OsAffx.13910.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2173010/11XH domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21690NANA4+12241721..12247641retrotransposon protein, putative, unclassified
LOC_Os04g21700NANA4+12248783..12250390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21710Os.4923.1.S1_at11/114+12254502..12256920expressed protein
LOC_Os04g21720OsAffx.13909.1.S1_at11/114+12265464..12265940hypothetical protein
LOC_Os04g21730OsAffx.13910.1.S1_at10/114+12272443..12273748XH domain containing protein
LOC_Os04g21740OsAffx.15781.4.S1_x_at11/114+12275518..12278170hypothetical protein
LOC_Os04g21740OsAffx.15781.5.S1_x_at7/114+12275518..12278170hypothetical protein
LOC_Os04g21750OsAffx.30435.1.S1_at3/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.20553.1.S1_at3/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.22699.1.S1_x_at2/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.16111.1.S1_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.19776.1.S1_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.8201.1.S1_x_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.199.1.S1_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21760OsAffx.3761.1.S1_x_at1/114+12287949..12290687hypothetical protein
LOC_Os04g21770NANA4+12293611..12294282retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21780OsAffx.26087.2.S1_at11/114+12298339..12298798hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13910.1.S1_at--482--6031Chr04:12273571..12273595 (25 bp)
GAGATCGCATTGAGCTTAGAGTAAT
LOC_Os04g21730
OsAffx.13910.1.S1_at--81--10451Chr04:12273556..12273580 (25 bp)
TTAGAGTAATGCACTTTTCTGGACA
LOC_Os04g21730
OsAffx.13910.1.S1_at--547--10591Chr04:12273540..12273564 (25 bp)
TTCTGGACATGGTGATTGGACTACA
LOC_Os04g21730
OsAffx.13910.1.S1_at--958--10851Chr04:12273525..12273549 (25 bp)
TTGGACTACAAATCGTGATCGGCCT
LOC_Os04g21730
OsAffx.13910.1.S1_at--6--8851Chr04:12273510..12273534 (25 bp)
TGATCGGCCTACTTTTACTCTTTAC
LOC_Os04g21730
OsAffx.13910.1.S1_at--732--1271Chr04:12273337..12273361 (25 bp)
AGATCAAGATGAATGCCCTAGCAAT
LOC_Os04g21730
OsAffx.13910.1.S1_at--359--31NONE
ATTGGCAGGGTCTTTCTTCAGCATA
NONE
OsAffx.13910.1.S1_at--797--10511Chr04:12272996..12273020 (25 bp)
TTCAGCATACAAGTGCCTGGGCACA
LOC_Os04g21730
OsAffx.13910.1.S1_at--407--7291Chr04:12272984..12273008 (25 bp)
GTGCCTGGGCACATATAGGTATCAA
LOC_Os04g21730
OsAffx.13910.1.S1_at--164--2751Chr04:12272900..12272924 (25 bp)
AAGAAGCTGCTATTCTTTGTTCGAA
LOC_Os04g21730
OsAffx.13910.1.S1_at--137--2971Chr04:12272849..12272873 (25 bp)
AATGGCACCCATTCATGATTGTCAT
LOC_Os04g21730
Target Sequence 
GAGATCGCATTGAGCTTAGAGTAATGCACTTTTCTGGACATGGTGATTGGACTACAAATCGTGATCGGCCTACTTTTACT
CTTTACCCTCTACAAGAATGCTACAAACTATGGCGATGGGGGACACAGATGATAAAAGTATTCTCGAAGATCAAGATGAA
TGCCCTAGCAATTAATGTTATTTGGATAGAGGCACAATTGAACTGTATTGGCAGGGTCTTTCTTCAGCATACAAGTGCCT
GGGCACATATAGGTATCAAACGAATGGGTGAGCTTGATATTATAGCATTTAAAAATGCTGTGAAACAAAAATCACCTGAA
GAAGCTGCTATTCTTTGTTCGAAGTGGGAAGCCGAAATTACAAAACCAGAATGGCACCCATTCATGATTGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis