Browse Element(s) Details


OsAffx.13917.1.S1_x_at

Description tigr:9632.m02042
TID=OsAffx.13917.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2214011/11hypothetical protein
LOC_Os12g416501/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22110Os.47999.3.S1_x_at1/114+12498163..12506746retrotransposon protein, putative, unclassified
LOC_Os04g22110OsAffx.8338.1.S1_x_at1/114+12498163..12506746retrotransposon protein, putative, unclassified
LOC_Os04g22120Os.51339.1.S1_at11/114+12509573..12514925Protein kinase domain containing protein, expressed
LOC_Os04g22130OsAffx.3854.1.S1_at11/114+12521196..12521447hypothetical protein
LOC_Os04g22140OsAffx.13917.1.S1_x_at11/114+12521672..12522585hypothetical protein
LOC_Os04g22140OsAffx.13917.1.S1_at11/114+12521672..12522585hypothetical protein
LOC_Os04g22140OsAffx.29544.1.S1_x_at1/114+12521672..12522585hypothetical protein
LOC_Os04g22150OsAffx.13918.1.S1_at11/114+12524867..12525867hypothetical protein
LOC_Os04g22160Os.26886.1.S1_x_at8/114+12528528..12531543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g22160Os.26886.3.S1_x_at5/114+12528528..12531543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g22160OsAffx.16244.1.S1_x_at1/114+12528528..12531543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g22170NANA4+12534618..12535520transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g22180Os.26886.6.S1_s_at9/114+12535770..12537516hypothetical protein
LOC_Os04g22180Os.26886.2.S1_s_at8/114+12535770..12537516hypothetical protein
LOC_Os04g22180OsAffx.16467.1.S1_at3/114+12535770..12537516hypothetical protein
LOC_Os04g22180OsAffx.3425.1.S1_at1/114+12535770..12537516hypothetical protein
LOC_Os04g22190Os.31845.1.S1_x_at1/114+12545306..12548516hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010017biological_processred or far red light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13917.1.S1_x_at--485--8811Chr04:12522506..12522530 (25 bp)
TGTTGCTGTTTCTGCATCATCTTGC
LOC_Os04g22140
OsAffx.13917.1.S1_x_at--181--10312Chr12:25735306..25735329 (24 bp)
TTTCTGCATCATCTTGCCCTGTTAA
LOC_Os12g41650
OsAffx.13917.1.S1_x_at--122--9171Chr04:12522463..12522487 (25 bp)
TGCCCTTGTTCTTTCGCAATTGCAA
LOC_Os04g22140
OsAffx.13917.1.S1_x_at--792--5191Chr04:12522448..12522472 (25 bp)
GCAATTGCAACTAGCATCTCCTTCT
LOC_Os04g22140
OsAffx.13917.1.S1_x_at--589--3311Chr04:12521825..12521849 (25 bp)
CACCGAGGCCGGAAAGGACGACGAT
LOC_Os04g22140
OsAffx.13917.1.S1_x_at--1060--8571Chr04:12521763..12521787 (25 bp)
TGGTTTCAGTACTCAGAGGAGATGC
LOC_Os04g22140
OsAffx.13917.1.S1_x_at--364--10531Chr04:12521759..12521783 (25 bp)
TTCAGTACTCAGAGGAGATGCTCCT
LOC_Os04g22140
OsAffx.13917.1.S1_x_at--799--9891Chr04:12521754..12521778 (25 bp)
TACTCAGAGGAGATGCTCCTGCCGA
LOC_Os04g22140
OsAffx.13917.1.S1_x_at--534--9651Chr04:12521751..12521775 (25 bp)
TCAGAGGAGATGCTCCTGCCGATGC
LOC_Os04g22140
OsAffx.13917.1.S1_x_at--533--3431Chr04:12521750..12521774 (25 bp)
CAGAGGAGATGCTCCTGCCGATGCC
LOC_Os04g22140
OsAffx.13917.1.S1_x_at--175--1831Chr04:12521721..12521745 (25 bp)
ACGCCCTTCTGCACAACGCCGGCAG
LOC_Os04g22140
Target Sequence 
TGTTGCTGTTTCTGCATCATCTTGCCCTGTTAAAAAGACACAGTGCCCTTGTTCTTTCGCAATTGCAACTAGCATCTCCT
TCTCTACTTCTACTCACTTCACACCTCAGCTCAGCTCATCTCCTGTCATCTCAGCTCAGCTCAGCTCAGAGAGAGAGAGA
GAGAGCTGCAGGTACAGGCGCCGCGGAAGCCACCGAGGCCGGAAAGGACGACGATGATGGCGATGGCGATGGCGGAGGAT
GGGTCGGCGTCGTGGTTTCAGTACTCAGAGGAGATGCTCCTGCCGATGCCGCCGACGCCCTTCTGCACAACGCCGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13917.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis