Browse Element(s) Details


OsAffx.14002.1.S1_at

Description tigr:9632.m02610
TID=OsAffx.14002.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=polyprotein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2769011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27660NANA4+16160656..16161851retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g27670OsAffx.3920.1.S1_s_at11/114+16162540..16166198Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27670OsAffx.3920.1.S1_at11/114+16162540..16166198Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27670Os.13759.1.S1_at2/114+16162540..16166198Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27680NANA4+16176033..16178979retrotransposon protein, putative, unclassified
LOC_Os04g27690OsAffx.14002.1.S1_at11/114+16183698..16184229hypothetical protein
LOC_Os04g27700OsAffx.26189.1.S1_at11/114+16184756..16185282expressed protein
LOC_Os04g27700OsAffx.29788.1.S1_x_at2/114+16184756..16185282expressed protein
LOC_Os04g27700OsAffx.21269.1.S1_x_at1/114+16184756..16185282expressed protein
LOC_Os04g27710NANA4+16188132..16191789retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27720OsAffx.26190.1.S1_at11/114+16192873..16197397Terpene synthase, N-terminal domain containing protein
LOC_Os04g27730OsAffx.31892.1.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.5.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.5.S1_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.2.S1_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.2.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.32289.1.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.7216.1.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.3.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14002.1.S1_at--617--6991Chr04:16183739..16183848 (25 bp)
GTACGCAGAGCACCTTTCAAATTTG
LOC_Os04g27690
OsAffx.14002.1.S1_at--137--2251Chr04:16183842..16183866 (25 bp)
AAATTTGGTTGCGATTCCCTGCTTA
LOC_Os04g27690
OsAffx.14002.1.S1_at--850--9071Chr04:16183861..16183885 (25 bp)
TGCTTAGCCCACGAACATCAGTTTT
LOC_Os04g27690
OsAffx.14002.1.S1_at--1096--5471Chr04:16183873..16183897 (25 bp)
GAACATCAGTTTTTCCTCGGTCCGA
LOC_Os04g27690
OsAffx.14002.1.S1_at--54--9271Chr04:16183886..16183910 (25 bp)
TCCTCGGTCCGATTAGTGATCTAGA
LOC_Os04g27690
OsAffx.14002.1.S1_at--260--7411Chr04:16183901..16183925 (25 bp)
GTGATCTAGATCCAACAGAGCTCAT
LOC_Os04g27690
OsAffx.14002.1.S1_at--415--531Chr04:16183927..16183951 (25 bp)
ATCGCCGAAACCAGTAGGATCTCAT
LOC_Os04g27690
OsAffx.14002.1.S1_at--10--2271Chr04:16183996..16184020 (25 bp)
AAATCTTGGCCCTCATTGGAGAAAA
LOC_Os04g27690
OsAffx.14002.1.S1_at--83--3931Chr04:16184022..16184046 (25 bp)
CTGGCCCGCATGGTATAAGCATGTA
LOC_Os04g27690
OsAffx.14002.1.S1_at--992--5071Chr04:16184092..16184116 (25 bp)
GCACTAGCCCTTACCCTGGAAAATT
LOC_Os04g27690
OsAffx.14002.1.S1_at--73--5791Chr04:16184125..16184149 (25 bp)
GACGAAACTTTGATGGCTTCTGCCA
LOC_Os04g27690
Target Sequence 
GTACGCAGAGCACCTTTCAAATTTGGTTGCGATTCCCTGCTTAGCCCACGAACATCAGTTTTTCCTCGGTCCGATTAGTG
ATCTAGATCCAACAGAGCTCATCATCGCCGAAACCAGTAGGATCTCATACAGAATAGGCAACCCCAACCTAAACCATTGG
AAAAACATTTTCAAATCTTGGCCCTCATTGGAGAAAAGCTGGCCCGCATGGTATAAGCATGTATCGGCTAGCAAGCAGGT
TCACTGGAATGAACTAGGAATCAGCCAAGCACTAGCCCTTACCCTGGAAAATTCAGCTAAGGACGAAACTTTGATGGCTT
CTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis