Browse Element(s) Details


OsAffx.14010.1.S1_at

Description tigr:9632.m02644
TID=OsAffx.14010.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2803011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27990OsAffx.3924.1.S1_at11/114+16342890..16343398B3 DNA binding domain containing protein
LOC_Os04g28000OsAffx.26193.1.S1_at11/114+16344903..16346252B3 DNA binding domain containing protein
LOC_Os04g28010Os.26685.1.A1_at11/114+16348739..16355292expressed protein
LOC_Os04g28010OsAffx.24293.1.S1_at2/114+16348739..16355292expressed protein
LOC_Os04g28010OsAffx.14337.1.S1_x_at1/114+16348739..16355292expressed protein
LOC_Os04g28020Os.55704.1.S1_at11/114+16360908..16363417expressed protein
LOC_Os04g28030OsAffx.14010.1.S1_at11/114+16364252..16364767hypothetical protein
LOC_Os04g28040Os.54222.1.S1_at11/114+16365821..16371956expressed protein
LOC_Os04g28050Os.17580.1.S1_at10/114+16374570..16379041expressed protein
LOC_Os04g28060Os.51166.1.S1_at11/114+16380327..16383645expressed protein
LOC_Os04g28074OsAffx.26194.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.26195.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.7849.1.S1_at3/114+16384265..16392270hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14010.1.S1_at--29--891Chr04:16364340..16364364 (25 bp)
AGGCCAAGTCCAGTAGCGAGCTCAC
LOC_Os04g28030
OsAffx.14010.1.S1_at--815--6951Chr04:16364352..16364376 (25 bp)
GTAGCGAGCTCACAAAGGTAGATCT
LOC_Os04g28030
OsAffx.14010.1.S1_at--819--971Chr04:16364386..16364410 (25 bp)
AGGAGACTCAGTGAGCTTCTCCTGC
LOC_Os04g28030
OsAffx.14010.1.S1_at--206--9591Chr04:16364503..16364527 (25 bp)
TCTTGGAGAAGGCACGTCAGCAAAG
LOC_Os04g28030
OsAffx.14010.1.S1_at--643--10571Chr04:16364555..16364579 (25 bp)
TTCTCCTCGACTATAGGGCCGATAG
LOC_Os04g28030
OsAffx.14010.1.S1_at--796--11Chr04:16364567..16364591 (25 bp)
ATAGGGCCGATAGAGCCGGTCACCA
LOC_Os04g28030
OsAffx.14010.1.S1_at--113--1371Chr04:16364578..16364602 (25 bp)
AGAGCCGGTCACCATTGATTATGAT
LOC_Os04g28030
OsAffx.14010.1.S1_at--1086--751Chr04:16364601..16364625 (25 bp)
ATGTCATCCTCAAGGAGAGCTTCGT
LOC_Os04g28030
OsAffx.14010.1.S1_at--1116--4271Chr04:16364664..16364688 (25 bp)
CCTCAAGCTTCTTCGTTGTCGTCAC
LOC_Os04g28030
OsAffx.14010.1.S1_at--422--10811Chr04:16364679..16364703 (25 bp)
TTGTCGTCACCCTACTGATGTCAGT
LOC_Os04g28030
OsAffx.14010.1.S1_at--713--8872Chr04:16364694..16364718 (25 bp)
TGATGTCAGTCACCATCCTGCTGCG
LOC_Os04g28030
Target Sequence 
AGGCCAAGTCCAGTAGCGAGCTCACAAAGGTAGATCTCAGCAGAGCAGGAGACTCAGTGAGCTTCTCCTGCCCTTCGCCG
CCCTCCACTTCGGGCTCCCTCACTGCTCTCAAGCGCCTCACCGCTTTCCTCAATCCTCTCCAAGCTCGGCCGGCGACGCT
AGGTCTTGGAGAAGGCACGTCAGCAAAGGAGCTCGAGGGAGTTGGCAGTGGCGGCTTCTCCTCGACTATAGGGCCGATAG
AGCCGGTCACCATTGATTATGATGTCATCCTCAAGGAGAGCTTCGTGGTGATCATGGACATCCTCCGCTTGTGCTACCTA
GCTCCCTCAAGCTTCTTCGTTGTCGTCACCCTACTGATGTCAGTCACCATCCTGCTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis