Browse Element(s) Details


OsAffx.14098.1.S1_at

Description tigr:9632.m03111
TID=OsAffx.14098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3259011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32540Os.49108.2.S1_x_at10/114+19404504..19408114Serine carboxypeptidase family protein, expressed
LOC_Os04g32550Os.4650.1.S1_at10/114+19410796..19413447Defender against cell death 1, putative, expressed
LOC_Os04g32560Os.37370.1.S1_at11/114+19413897..19420445ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os04g32570OsAffx.26564.1.S1_at11/114+19420993..19421784hypothetical protein
LOC_Os04g32580OsAffx.26288.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580Os.20057.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580OsAffx.24671.1.S1_s_at1/114+19423109..19425313expressed protein
LOC_Os04g32590Os.5371.1.S1_s_at11/114+19425396..19428386expressed protein
LOC_Os04g32590OsAffx.14098.1.S1_at11/114+19425396..19428386expressed protein
LOC_Os04g32600OsAffx.26289.1.S1_at10/114+19439893..19442461expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14098.1.S1_at--237--1351Chr04:19425972..19425996 (25 bp)
AGAGCCAAGCAACCGGAACAAATTG
LOC_Os04g32590
OsAffx.14098.1.S1_at--939--3231Chr04:19425967..19425991 (25 bp)
CAAGCAACCGGAACAAATTGTCGAG
LOC_Os04g32590
OsAffx.14098.1.S1_at--827--2231Chr04:19425953..19425977 (25 bp)
AAATTGTCGAGGACTCACCAGCTCA
LOC_Os04g32590
OsAffx.14098.1.S1_at--1139--10771Chr04:19425950..19425974 (25 bp)
TTGTCGAGGACTCACCAGCTCAGGG
LOC_Os04g32590
OsAffx.14098.1.S1_at--1125--951Chr04:19425944..19425968 (25 bp)
AGGACTCACCAGCTCAGGGCGCGCA
LOC_Os04g32590
OsAffx.14098.1.S1_at--492--1651Chr04:19425911..19425935 (25 bp)
AGCGCAGCGACGACGCCTCAGGAGA
LOC_Os04g32590
OsAffx.14098.1.S1_at--442--1651Chr04:19425906..19425930 (25 bp)
AGCGACGACGCCTCAGGAGAAGCTC
LOC_Os04g32590
OsAffx.14098.1.S1_at--172--5811Chr04:19425900..19425924 (25 bp)
GACGCCTCAGGAGAAGCTCCTGATC
LOC_Os04g32590
OsAffx.14098.1.S1_at--333--7591Chr04:19425870..19425894 (25 bp)
GGGCAGCTGATCGAAATCCTAGACC
LOC_Os04g32590
OsAffx.14098.1.S1_at--83--5071Chr04:19425868..19425892 (25 bp)
GCAGCTGATCGAAATCCTAGACCGG
LOC_Os04g32590
OsAffx.14098.1.S1_at--532--1611Chr04:19425866..19425890 (25 bp)
AGCTGATCGAAATCCTAGACCGGAG
LOC_Os04g32590
Target Sequence 
AGAGCCAAGCAACCGGAACAAATTGTCGAGGACTCACCAGCTCAGGGCGCGCACAAGAGGCAGCGCAGCGACGACGCCTC
AGGAGAAGCTCCTGATCTGCAGGGGCAGCTGATCGAAATCCTAGACCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis