Browse Element(s) Details


OsAffx.14234.1.S1_at

Description tigr:9632.m03993
TID=OsAffx.14234.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4188011/11transposon protein, putative, unclassified
LOC_Os09g151802/11transposon protein, putative, unclassified, expressed
LOC_Os10g384402/11transposon protein, putative, unclassified
LOC_Os09g138601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41850Os.17377.1.S1_at11/114+24576568..24582653RWP-RK domain containing protein, expressed
LOC_Os04g41860Os.51201.1.S1_at11/114+24587090..24588139expressed protein
LOC_Os04g41860Os.51201.1.S1_x_at11/114+24587090..24588139expressed protein
LOC_Os04g41870Os.54439.1.S1_at10/114+24591237..24592046expressed protein
LOC_Os04g41880OsAffx.14234.1.S1_at11/114+24602933..24604198transposon protein, putative, unclassified
LOC_Os04g41890OsAffx.26422.1.S1_at11/114+24606435..24608528hypothetical protein
LOC_Os04g41900Os.11538.1.S1_at11/114+24611283..24612280expressed protein
LOC_Os04g41900Os.24023.1.A1_x_at1/114+24611283..24612280expressed protein
LOC_Os04g41910Os.24827.1.S1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41910Os.24053.1.A1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41920Os.6933.1.S1_at11/114+24622208..24624571expressed protein
LOC_Os04g41930OsAffx.4053.1.S1_at11/114+24625088..24625944expressed protein
LOC_Os04g41950Os.49714.1.S1_at11/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.20033.1.S1_at2/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950OsAffx.14235.1.A1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.15749.1.S1_at1/114+24627808..24634844EF hand family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14234.1.S1_at--1073--4571Chr04:24604102..24604126 (25 bp)
GCTGACCGGTCTTTTGACCCGGTTG
LOC_Os04g41880
OsAffx.14234.1.S1_at--620--10371Chr04:24604091..24604115 (25 bp)
TTTTGACCCGGTTGCGGCCGAGCTG
LOC_Os04g41880
OsAffx.14234.1.S1_at--867--8997Chr10:15918132..15918153 (22 bp)
TGCGGTTTTATAGGCACGGGAAGTC
NONE
OsAffx.14234.1.S1_at--132--61711Chr10:15918164..15918188 (25 bp)
GAGGAAACCGACTTAGGTGGTCAAG
NONE
OsAffx.14234.1.S1_at--570--1051Chr04:24603269..24603293 (25 bp)
AGGTGGTCAAGGGTGCTCGGGTGGC
LOC_Os04g41880
OsAffx.14234.1.S1_at--462--2891Chr04:24603261..24603285 (25 bp)
AAGGGTGCTCGGGTGGCGCGGCGCT
LOC_Os04g41880
OsAffx.14234.1.S1_at--471--7637Chr09:9214837..9214861 (25 bp)
GGGAGCCGAGGCTCTGCCTCCACGT
LOC_Os09g15180
OsAffx.14234.1.S1_at--869--5091Chr04:24603070..24603094 (25 bp)
GCACGCGCGCGAAGGTGGAGCGAGT
LOC_Os04g41880
OsAffx.14234.1.S1_at--87--3431Chr04:24603035..24603059 (25 bp)
CAGAGCGGGCGCAGGCATGGCCAGG
LOC_Os04g41880
OsAffx.14234.1.S1_at--1058--5711Chr04:24602971..24602995 (25 bp)
GAGAGGGCCAAAATCGAACAGCGGT
LOC_Os04g41880
OsAffx.14234.1.S1_at--714--4371Chr04:24602964..24602988 (25 bp)
CCAAAATCGAACAGCGGTGGTGGGA
LOC_Os04g41880
Target Sequence 
GCTGACCGGTCTTTTGACCCGGTTGCGGCCGAGCTGGCGCCGACGTGGCGCCTTCGTGGTTGCCACGCGGGCTGGTGGGA
GGAAGAAGAAGGAGGCCGGCCAAGATGGACGGGTAGGGGCGACAATGGCGCGACAACGTGGAGAGTGAAGCGGGAGGGGT
TGAGAGGAGGGGCTCGGCTGCGGTTTTATAGGCACGGGAAGTCGGTTTTGGGGGAGGAAACCGACTTAGGTGGTCAAGGG
TGCTCGGGTGGCGCGGCGCTTGCGGTCAAGGAGCGGCAGGAGGTGGTCACGGGCGGCCGGGCTGAGAGGGAAAAAGCAAA
AAGGGGAGGGGAAAGGAGCTCGGCTTCTTGCCGATTTGGGCGAGCAGAGGGAGGAGGGAGAGCGCGTGAGAGAGGGGAGC
CGAGGCTCTGCCTCCACGTCTTGGACGCACGCGCGCGAAGGTGGAGCGAGTGGCAGGGCGGCAGAGCGGGCGCAGGCATG
GCCAGGGCGGACGGTGACCGGGCGGTCAGCCACCACGACGCGCGGGAGAGGGCCAAAATCGAACAGCGGTGGTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis