Browse Element(s) Details


OsAffx.14271.1.S1_at

Description tigr:9632.m04336
TID=OsAffx.14271.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4510011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45050OsAffx.14270.1.S1_at11/114+26436674..26437090hypothetical protein
LOC_Os04g45060OsAffx.4095.1.S1_at11/114+26440920..26442318typical P-type R2R3 Myb protein, putative
LOC_Os04g45070Os.7891.1.S1_a_at11/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45070OsAffx.8592.1.S1_at1/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45080OsAffx.26468.1.S1_at10/114+26450084..26452902expressed protein
LOC_Os04g45090Os.14694.1.S1_at11/114+26455262..26457648Cytochrome b561 family protein, expressed
LOC_Os04g45100OsAffx.14271.1.S1_at11/114+26458907..26459637expressed protein
LOC_Os04g45110OsAffx.26469.1.S1_at11/114+26460405..26461755Serpin family protein
LOC_Os04g45110OsAffx.26469.2.S1_x_at2/114+26460405..26461755Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_x_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45130OsAffx.14273.1.S1_at11/114+26465542..26466563heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os04g45140Os.26579.1.S1_at11/114+26470776..26473578expressed protein
LOC_Os04g45160OsAffx.14274.1.A1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.1.S1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.2.S1_x_at9/114+26476543..26481414expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14271.1.S1_at--298--2951Chr04:26459227..26459251 (25 bp)
AAGGCGAGGGCGTTCCTCCTCAACA
LOC_Os04g45100
OsAffx.14271.1.S1_at--145--1071Chr04:26459233..26459257 (25 bp)
AGGGCGTTCCTCCTCAACATGACCA
LOC_Os04g45100
OsAffx.14271.1.S1_at--1--2511Chr04:26459248..26459272 (25 bp)
AACATGACCATCTCCATGGAGCACC
LOC_Os04g45100
OsAffx.14271.1.S1_at--1020--451Chr04:26459257..26459281 (25 bp)
ATCTCCATGGAGCACCAAGCTTTGA
LOC_Os04g45100
OsAffx.14271.1.S1_at--76--8551Chr04:26459264..26459288 (25 bp)
TGGAGCACCAAGCTTTGACACGCCT
LOC_Os04g45100
OsAffx.14271.1.S1_at--124--2111Chr04:26459297..26459321 (25 bp)
ACATGCACGACTTGTTCGCCATCGG
LOC_Os04g45100
OsAffx.14271.1.S1_at--900--5091Chr04:26459301..26459325 (25 bp)
GCACGACTTGTTCGCCATCGGACCA
LOC_Os04g45100
OsAffx.14271.1.S1_at--758--1971Chr04:26459325..26459349 (25 bp)
ACTCCACCGCCAATCTTGGAGATGT
LOC_Os04g45100
OsAffx.14271.1.S1_at--568--791Chr04:26459346..26459370 (25 bp)
ATGTGGTCCGCTGCTCGGACCTCTA
LOC_Os04g45100
OsAffx.14271.1.S1_at--520--4091Chr04:26459439..26459463 (25 bp)
CGACGAAGACATGGGCGGCACACCT
LOC_Os04g45100
OsAffx.14271.1.S1_at--304--1651Chr04:26459491..26459515 (25 bp)
AGCGAGATGGCAGCTGTGCAGCGGA
LOC_Os04g45100
Target Sequence 
AAGGCGAGGGCGTTCCTCCTCAACATGACCATCTCCATGGAGCACCAAGCTTTGACACGCCTCGCGCGGCACATGCACGA
CTTGTTCGCCATCGGACCACTCCACCGCCAATCTTGGAGATGTGGTCCGCTGCTCGGACCTCTACTCGCGGCGGCCGTAG
AGGGGAGGAACTGCCAGGAGCGAGAGGCGTACGGAGGGCACGACGACGACGACGACGAAGACATGGGCGGCACACCTCGG
GGGCGAATGGATCAGTGGCGAGAGAGCGAGATGGCAGCTGTGCAGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis