Browse Element(s) Details


OsAffx.14277.1.S1_at

Description tigr:9632.m04376
TID=OsAffx.14277.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4550011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45460OsAffx.14276.1.S1_at11/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45460Os.49436.1.S1_x_at10/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45470Os.47710.2.A1_s_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.27527.1.S1_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.47710.1.A1_at9/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45480Os.49266.1.A1_at11/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45480Os.16317.1.S1_at9/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45490Os.7994.1.S1_at11/114+26698804..26701555Elongation factor G, chloroplast precursor, putative, expressed
LOC_Os04g45500OsAffx.14277.1.S1_at11/114+26704183..26704923hypothetical protein
LOC_Os04g45510OsAffx.30150.1.S1_at3/114+26706912..26707253hypothetical protein
LOC_Os04g45520Os.55511.1.S1_at11/114+26712380..26713541Integral membrane protein, expressed
LOC_Os04g45530OsAffx.4098.1.S1_at11/114+26718949..26719543hypothetical protein
LOC_Os04g45540NANA4+26721433..26727660retrotransposon protein, putative, unclassified
LOC_Os04g45550NANA4+26728507..26731261retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14277.1.S1_at--1149--9451Chr04:26704239..26704263 (25 bp)
TCTCCTCTTATCACCGTGGGTTGAA
LOC_Os04g45500
OsAffx.14277.1.S1_at--744--9531Chr04:26704244..26704268 (25 bp)
TCTTATCACCGTGGGTTGAAAGGGA
LOC_Os04g45500
OsAffx.14277.1.S1_at--643--8051Chr04:26704269..26704292 (24 bp)
GGAGATGGAGACCTTGCTCCTTTGC
LOC_Os04g45500
OsAffx.14277.1.S1_at--918--6231Chr04:26704272..26704292 (21 bp)
GATGGAGACCTTGCTCCTTTGCCCA
LOC_Os04g45500
OsAffx.14277.1.S1_at--1139--10271Chr04:26704748..26704769 (22 bp)
TTTGCCCACCGAGATTGCTCGAGAG
LOC_Os04g45500
OsAffx.14277.1.S1_at--464--4551Chr04:26704748..26704772 (25 bp)
GCCCACCGAGATTGCTCGAGAGCGG
LOC_Os04g45500
OsAffx.14277.1.S1_at--1081--7971Chr04:26704830..26704854 (25 bp)
GGATGGCACGTTCGGCGAGGTCAAG
LOC_Os04g45500
OsAffx.14277.1.S1_at--990--1011Chr04:26704847..26704871 (25 bp)
AGGTCAAGGCGGACGACGACCAGCA
LOC_Os04g45500
OsAffx.14277.1.S1_at--1122--5771Chr04:26704858..26704882 (25 bp)
GACGACGACCAGCAGATTTTGTGCC
LOC_Os04g45500
OsAffx.14277.1.S1_at--310--5771Chr04:26704861..26704885 (25 bp)
GACGACCAGCAGATTTTGTGCCCTC
LOC_Os04g45500
OsAffx.14277.1.S1_at--732--1511Chr04:26704868..26704892 (25 bp)
AGCAGATTTTGTGCCCTCCTCATCG
LOC_Os04g45500
Target Sequence 
TCTCCTCTTATCACCGTGGGTTGAAAGGGAGGAGATGGAGACCTTGCTCCTTTGCCCACCGAGATTGCTCGAGAGCGGGC
GGGGGAAGGAAGTGGAGGTCGAGGACGACACGAGGGGTGCAGGGAGGTTGAATGGGGATGGCACGTTCGGCGAGGTCAAG
GCGGACGACGACCAGCAGATTTTGTGCCCTCCTCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis