Browse Element(s) Details


OsAffx.14342.1.S1_at

Description tigr:9632.m04794
TID=OsAffx.14342.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4939411/11Ulp1 protease family, C-terminal catalytic domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49340OsAffx.26538.1.S1_at10/114+29229721..29233325tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49350Os.15142.1.S1_at11/114+29236771..29239032pentatricopeptide, putative, expressed
LOC_Os04g49360NANA4+29239530..29240504F-box domain containing protein, expressed
LOC_Os04g49370Os.26511.1.S1_at11/114+29246807..29247934expressed protein
LOC_Os04g49380OsAffx.25217.1.S1_x_at9/114+29249458..29256274transposon protein, putative, unclassified
LOC_Os04g49380OsAffx.25217.2.S1_x_at5/114+29249458..29256274transposon protein, putative, unclassified
LOC_Os04g49394Os.33624.3.S1_x_at11/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49394OsAffx.14342.1.S1_at11/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49394OsAffx.25216.1.S1_x_at7/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49410Os.2369.1.S1_a_at11/114+29266053..29269509Alpha-expansin 13 precursor, putative, expressed
LOC_Os04g49420NANA4+29269861..29270469Histone H4, putative, expressed
LOC_Os04g49430OsAffx.4128.1.S1_at11/114+29274839..29279862Regulator of chromosome condensation family protein, expressed
LOC_Os04g49440OsAffx.14343.1.S1_at11/114+29280376..29281215RNA recognition motif, putative, expressed
LOC_Os04g49450Os.5335.1.S1_at11/114+29281866..29284686myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14342.1.S1_at--716--6791Chr04:29261913..29261937 (25 bp)
GTTATTCTACGCAACACCCTCGCTT
LOC_Os04g49394
OsAffx.14342.1.S1_at--449--111Chr04:29261910..29261934 (25 bp)
ATTCTACGCAACACCCTCGCTTGGG
LOC_Os04g49394
OsAffx.14342.1.S1_at--825--6351Chr04:29261885..29261909 (25 bp)
GATGCCGTCACAGCGGAGCATGAGC
LOC_Os04g49394
OsAffx.14342.1.S1_at--128--4031Chr04:29261880..29261904 (25 bp)
CGTCACAGCGGAGCATGAGCATAGT
LOC_Os04g49394
OsAffx.14342.1.S1_at--486--8071Chr04:29261871..29261895 (25 bp)
GGAGCATGAGCATAGTGGCGGCGTC
LOC_Os04g49394
OsAffx.14342.1.S1_at--1036--7511Chr04:29261776..29261800 (25 bp)
GTGGAGAAGCACTTGTAGTTCTTAA
LOC_Os04g49394
OsAffx.14342.1.S1_at--651--10031Chr04:29261761..29261785 (25 bp)
TAGTTCTTAAGGAAGCCCGTGCAGC
LOC_Os04g49394
OsAffx.14342.1.S1_at--856--3391Chr04:29261740..29261764 (25 bp)
CAGCTGTAGCAGTAGAGCGCGACGA
LOC_Os04g49394
OsAffx.14342.1.S1_at--125--6191Chr04:29261702..29261726 (25 bp)
GAGGACGACGACATCAAGGAGTTAG
LOC_Os04g49394
OsAffx.14342.1.S1_at--536--1831Chr04:29261695..29261719 (25 bp)
ACGACATCAAGGAGTTAGGCGACGA
LOC_Os04g49394
OsAffx.14342.1.S1_at--211--991Chr04:29261686..29261710 (25 bp)
AGGAGTTAGGCGACGAGCTTCTGCA
LOC_Os04g49394
Target Sequence 
GTTATTCTACGCAACACCCTCGCTTGGGGATGCCGTCACAGCGGAGCATGAGCATAGTGGCGGCGTCGAGAGGGGTGTCG
AGGCGGTGGAGGACAGCGGCGGCGATGGCGCCGCCCATGAAGAAGAGGACAAAGAAAGTGGAGAAGCACTTGTAGTTCTT
AAGGAAGCCCGTGCAGCTGTAGCAGTAGAGCGCGACGAGGACGAAGGTGACGAGGACGACGACATCAAGGAGTTAGGCGA
CGAGCTTCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis