Browse Element(s) Details


OsAffx.14490.1.S1_at

Description tigr:9633.m00059
TID=OsAffx.14490.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0150011/11CAP-Gly domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01460Os.7299.1.S1_at11/115+241786..244487TPR Domain containing protein, expressed
LOC_Os05g01470Os.10352.1.S1_at9/115+245976..256074Methionine S-methyltransferase, putative, expressed
LOC_Os05g01480Os.12383.1.S1_at11/115+263024..265567Ras-related protein Rab11C, putative, expressed
LOC_Os05g01490Os.36864.1.A1_at3/115+265404..268749GTP-binding protein YPTM1, putative, expressed
LOC_Os05g01500OsAffx.14490.1.S1_at11/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01500Os.18560.1.S1_at10/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01510OsAffx.26678.1.S1_at9/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01510Os.12600.1.S1_at7/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01520Os.27562.1.S1_at11/115+282174..289147YT521-B-like family protein, expressed
LOC_Os05g01530Os.11969.1.S1_at11/115+290696..291722expressed protein
LOC_Os05g01540Os.27339.1.S1_at11/115+295261..298816retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01550Os.19616.1.S1_at11/115+299203..302456Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0007021biological_processtubulin folding
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14490.1.S1_at--733--10293Chr05:274451..274475 (25 bp)
TTTCCTTTCCTCTCAAACACAGGTT
LOC_Os05g01500
OsAffx.14490.1.S1_at--981--3671Chr05:274455..274479 (25 bp)
CTTTCCTCTCAAACACAGGTTGGTT
LOC_Os05g01500
OsAffx.14490.1.S1_at--242--3111Chr05:274470..274494 (25 bp)
CAGGTTGGTTATGTTTAGCTTTCAC
LOC_Os05g01500
OsAffx.14490.1.S1_at--101--6831Chr05:274482..274506 (25 bp)
GTTTAGCTTTCACATGCGAGATATT
LOC_Os05g01500
OsAffx.14490.1.S1_at--1082--4611Chr05:274497..274521 (25 bp)
GCGAGATATTAGTGGCAACTTGCTG
LOC_Os05g01500
OsAffx.14490.1.S1_at--644--7531Chr05:274508..274532 (25 bp)
GTGGCAACTTGCTGATAGTGATATA
LOC_Os05g01500
OsAffx.14490.1.S1_at--842--6491Chr05:274521..274545 (25 bp)
GATAGTGATATAACATGCTCTCCTG
LOC_Os05g01500
OsAffx.14490.1.S1_at--442--351Chr05:274530..274554 (25 bp)
ATAACATGCTCTCCTGTTTTGCTAC
LOC_Os05g01500
OsAffx.14490.1.S1_at--722--9271Chr05:274541..274565 (25 bp)
TCCTGTTTTGCTACGACGGCTAAAT
LOC_Os05g01500
OsAffx.14490.1.S1_at--958--1851Chr05:274553..274577 (25 bp)
ACGACGGCTAAATTGCCTATGATTT
LOC_Os05g01500
OsAffx.14490.1.S1_at--1055--2231Chr05:274562..274586 (25 bp)
AAATTGCCTATGATTTGCATGTTAT
LOC_Os05g01500
Target Sequence 
TTTCCTTTCCTCTCAAACACAGGTTGGTTATGTTTAGCTTTCACATGCGAGATATTAGTGGCAACTTGCTGATAGTGATA
TAACATGCTCTCCTGTTTTGCTACGACGGCTAAATTGCCTATGATTTGCATGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis