Browse Element(s) Details


OsAffx.14506.1.S1_at

Description tigr:9633.m00178
TID=OsAffx.14506.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0260011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02540Os.56308.1.S1_at3/115+861727..862626hypothetical protein
LOC_Os05g02550NANA5+863060..864028F-box domain containing protein
LOC_Os05g02560NANA5+867628..869531expressed protein
LOC_Os05g02570Os.56308.1.S1_at11/115+873017..874596F-box protein interaction domain containing protein, expressed
LOC_Os05g02580Os.8378.1.S1_at11/115+876879..881081expressed protein
LOC_Os05g02590OsAffx.26695.1.S1_at11/115+881497..882717Transferase family protein
LOC_Os05g02590OsAffx.18024.1.S1_x_at1/115+881497..882717Transferase family protein
LOC_Os05g02600OsAffx.14506.1.S1_at11/115+883935..884750hypothetical protein
LOC_Os05g02610OsAffx.14507.1.S1_at11/115+887693..888551hypothetical protein
LOC_Os05g02620OsAffx.26696.1.S1_at11/115+891039..891389hypothetical protein
LOC_Os05g02630OsAffx.26697.1.S1_x_at11/115+897617..898524hypothetical protein
LOC_Os05g02630OsAffx.26697.1.S1_at10/115+897617..898524hypothetical protein
LOC_Os05g02640Os.53547.1.S1_at11/115+900062..904115hydrolase, NUDIX family protein, expressed
LOC_Os05g02650Os.31700.2.S1_s_at11/115+904477..912072expressed protein
LOC_Os05g02650OsAffx.14508.1.S1_at11/115+904477..912072expressed protein
LOC_Os05g02650Os.39957.1.A1_at9/115+904477..912072expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14506.1.S1_at--440--6311Chr05:883965..883989 (25 bp)
GATGAGCATATGCTACTACCGGCAA
LOC_Os05g02600
OsAffx.14506.1.S1_at--1019--5911Chr05:883968..883992 (25 bp)
GAGCATATGCTACTACCGGCAAAAT
LOC_Os05g02600
OsAffx.14506.1.S1_at--398--2011Chr05:883979..884003 (25 bp)
ACTACCGGCAAAATTGTTATCTGCA
LOC_Os05g02600
OsAffx.14506.1.S1_at--100--5151Chr05:883986..884010 (25 bp)
GCAAAATTGTTATCTGCATCTCAAG
LOC_Os05g02600
OsAffx.14506.1.S1_at--717--6771Chr05:883994..884018 (25 bp)
GTTATCTGCATCTCAAGAAGGTAAG
LOC_Os05g02600
OsAffx.14506.1.S1_at--429--2231Chr05:884041..884496 (25 bp)
AAATAAGGACGCTCATCAACGTGGT
LOC_Os05g02600
OsAffx.14506.1.S1_at--24--8111Chr05:884478..884502 (25 bp)
GGACGCTCATCAACGTGGTGAAGCA
LOC_Os05g02600
OsAffx.14506.1.S1_at--668--2571Chr05:884489..884513 (25 bp)
AACGTGGTGAAGCACTCTGATCCTG
LOC_Os05g02600
OsAffx.14506.1.S1_at--13--7771Chr05:884494..884518 (25 bp)
GGTGAAGCACTCTGATCCTGAGGGT
LOC_Os05g02600
OsAffx.14506.1.S1_at--505--2731Chr05:884498..884522 (25 bp)
AAGCACTCTGATCCTGAGGGTGAAA
LOC_Os05g02600
OsAffx.14506.1.S1_at--481--6351Chr05:884507..884718 (25 bp)
GATCCTGAGGGTGAAATGGCATATA
LOC_Os05g02600
Target Sequence 
GATGAGCATATGCTACTACCGGCAAAATTGTTATCTGCATCTCAAGAAGGTAAGATTAAGCCTTCTAAAAAAACAAAAAT
AAGGACGCTCATCAACGTGGTGAAGCACTCTGATCCTGAGGGTGAAATGGCATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis