Browse Element(s) Details


OsAffx.14512.1.S1_at

Description tigr:9633.m00194
TID=OsAffx.14512.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0279011/11kinase interacting protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02740OsAffx.26699.1.S1_s_at11/115+965458..966245hypothetical protein
LOC_Os05g02740OsAffx.26699.1.S1_at8/115+965458..966245hypothetical protein
LOC_Os05g02750Os.18539.1.S1_at11/115+967650..968788expressed protein
LOC_Os05g02760OsAffx.14511.1.S1_at11/115+969464..972158expressed protein
LOC_Os05g02770Os.7381.1.S1_at10/115+975566..977383expressed protein
LOC_Os05g02780Os.37849.1.A1_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02780Os.37849.1.A1_s_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02790OsAffx.14512.1.S1_at11/115+982594..985698kinase interacting protein, putative, expressed
LOC_Os05g02799NANA5+986759..986988NA
LOC_Os05g02810Os.57055.1.S1_at11/115+988676..990898zinc finger family protein, putative, expressed
LOC_Os05g02820Os.23158.1.S1_at11/115+992049..995638protein transport protein, putative, expressed
LOC_Os05g02820Os.3887.1.S1_at11/115+992049..995638protein transport protein, putative, expressed
LOC_Os05g02840OsAffx.14514.1.S1_at11/115+1003784..1005697hypothetical protein
LOC_Os05g02840Os.8881.1.S1_at10/115+1003784..1005697hypothetical protein
LOC_Os05g02850OsAffx.20354.1.S1_at3/115+1008751..1011612retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14512.1.S1_at--663--6991Chr05:983167..983191 (25 bp)
GTACGAGCAACTACAACCTGAGATT
LOC_Os05g02790
OsAffx.14512.1.S1_at--10--2971Chr05:983106..983130 (25 bp)
AATGGCCGTGCGGATGATCCATCAG
LOC_Os05g02790
OsAffx.14512.1.S1_at--343--2891Chr05:983079..983103 (25 bp)
AAGGGTGACTCAAATGCCATAGAAA
LOC_Os05g02790
OsAffx.14512.1.S1_at--761--7631Chr05:982991..983015 (25 bp)
GGGAGCTCCAGTATAGGTTCGCTTC
LOC_Os05g02790
OsAffx.14512.1.S1_at--880--5451Chr05:982821..982845 (25 bp)
GAACTGCAATCTGGTCTGGATCATA
LOC_Os05g02790
OsAffx.14512.1.S1_at--1143--5951Chr05:982747..982771 (25 bp)
GAGAACTAGCTTATCGGAGGCCAAA
LOC_Os05g02790
OsAffx.14512.1.S1_at--290--3371Chr05:982714..982738 (25 bp)
CACCTGGAAAAATGCACCCTCTAGA
LOC_Os05g02790
OsAffx.14512.1.S1_at--245--5511Chr05:982691..982715 (25 bp)
GAACAAGAGTGCCACTCCGGCTATT
LOC_Os05g02790
OsAffx.14512.1.S1_at--88--3691Chr05:982671..982695 (25 bp)
CTATTCCTCTTTCCAGCCAAGAAAA
LOC_Os05g02790
OsAffx.14512.1.S1_at--1011--5411Chr05:982645..982669 (25 bp)
GAAGCCGTCACTATTGGCATGTGTA
LOC_Os05g02790
OsAffx.14512.1.S1_at--1137--8731Chr05:982624..982648 (25 bp)
TGTAAACCCGGCTCTTCAGAAACAG
LOC_Os05g02790
Target Sequence 
GTACGAGCAACTACAACCTGAGATTGGGAAGCTAACAAACAAGGACAAGCTCAAGACAAATAATGGCCGTGCGGATGATC
CATCAGCAAAGGGTGACTCAAATGCCATAGAAAAACGGCTAAGAGAACTCAAGATAGAACTACAAGTATGGTTGGAACAG
AATGCCATGCTCAAAGGGGAGCTCCAGTATAGGTTCGCTTCCCTCTGCAGCATACAAGAGGAAATTGAAGCAACCATGGA
GATGGGTGCAGACCCTGAGGAAGGAGCTCATTTCACTTCATATCAAGCTGCAAAATTCCAAGGGGAGGTTATGAACATGA
AACAGGAGAACAACAAGGTTGCTGATGAACTGCAATCTGGTCTGGATCATATAAAAGGGCTCCAAGCAGAAATTGAAAAG
GTCATTGAAAAGATAGTCGAGAGAACTAGCTTATCGGAGGCCAAAGGAAGCAGCACCTGGAAAAATGCACCCTCTAGAAC
AAGAGTGCCACTCCGGCTATTCCTCTTTCCAGCCAAGAAAAAGAAGCCGTCACTATTGGCATGTGTAAACCCGGCTCTTC
AGAAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis