Browse Element(s) Details


OsAffx.14523.1.S1_s_at

Description tigr:9633.m00234
TID=OsAffx.14523.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0313011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03090OsAffx.28514.4.S1_s_at11/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03090OsAffx.28514.2.S1_x_at10/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03100OsAffx.14521.1.S1_at11/115+1200884..1207700HECT-domain family protein, expressed
LOC_Os05g03110OsAffx.14522.1.S1_at11/115+1209039..1210523PWWP domain containing protein, expressed
LOC_Os05g03120Os.51828.1.S1_at11/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120Os.51828.2.S1_x_at6/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120OsAffx.19113.1.A1_at1/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03130OsAffx.14523.1.S1_s_at11/115+1224313..1225030expressed protein
LOC_Os05g03140Os.35209.1.S1_s_at11/115+1232628..1236833senescence-associated family protein, putative, expressed
LOC_Os05g03140Os.53955.1.S1_at11/115+1232628..1236833senescence-associated family protein, putative, expressed
LOC_Os05g03150OsAffx.26707.1.S1_at9/115+1238093..1239939expressed protein
LOC_Os05g03160NANA5+1244665..1245102hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0042538biological_processhyperosmotic salinity response
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14523.1.S1_s_at--782--4851Chr05:1224940..1224964 (25 bp)
GCTAGCTACCTGAATACTACACTGA
LOC_Os05g03130
OsAffx.14523.1.S1_s_at--917--491Chr05:1224729..1224825 (25 bp)
ATCGGCATGGAGTTCTGGATCGCCC
LOC_Os05g03130
OsAffx.14523.1.S1_s_at--1119--531Chr05:1224693..1224717 (25 bp)
ATCCTGGGATACTTACCCGGCATCA
LOC_Os05g03130
OsAffx.14523.1.S1_s_at--595--1211Chr05:1224637..1224661 (25 bp)
AGTTAGTTACTACCAGTGATCTGTT
LOC_Os05g03130
OsAffx.14523.1.S1_s_at--152--7411Chr05:1224622..1224646 (25 bp)
GTGATCTGTTCTGATCGATCGATTA
LOC_Os05g03130
OsAffx.14523.1.S1_s_at--415--10111Chr05:1224562..1224586 (25 bp)
TATGTAAGTCGTACTAGCTGCTACT
LOC_Os05g03130
OsAffx.14523.1.S1_s_at--1098--3831Chr05:1224517..1224541 (25 bp)
CTGCTTGCCTGGATCAGTGGAGCTA
LOC_Os05g03130
OsAffx.14523.1.S1_s_at--1125--9311Chr05:1224491..1224515 (25 bp)
TCGCCTAGACTAGACATCGATCTCT
LOC_Os05g03130
OsAffx.14523.1.S1_s_at--411--4051Chr05:1224474..1224498 (25 bp)
CGATCTCTGTAGTTTCTGTCAGCAT
LOC_Os05g03130
OsAffx.14523.1.S1_s_at--841--3151Chr05:1224431..1224455 (25 bp)
AATTCTGACTTTCTGATGGATCGAT
LOC_Os05g03130
OsAffx.14523.1.S1_s_at--1066--6291Chr05:1224375..1224399 (25 bp)
GATGATGATCTTCATGTATGTCTCC
LOC_Os05g03130
Target Sequence 
GCTAGCTACCTGAATACTACACTGAAGAAGAATCGATCGATATCTGAAGGAAGTGAAGTAAGTGATGGGTTCAGAGACGT
TCTTGGAGATCTTGCTGGCCATCCTGCTGCCGCCGCTCGGCGTCTTCCTCCGCTACGGCATCGGCATGGAGTTCTGGATC
GCCCTGCTGCTCACCATCCTGGGATACTTACCCGGCATCATCTACGCTGTTTATGTGCTTGTTGCTTAATTAGTTAGTTA
CTACCAGTGATCTGTTCTGATCGATCGATTATGTTAGTATCATGGTTTAGTTTAGTTGGTTTCTATTATGTAAGTCGTAC
TAGCTGCTACTTACGGCATGTTCTTCGGTTCCTGCTTGCCTGGATCAGTGGAGCTAGTCGCCTAGACTAGACATCGATCT
CTGTAGTTTCTGTCAGCATTCAGAAAAGTGTGATCTGAATTCTGACTTTCTGATGGATCGATGAGTATGGATGATTCATG
TGTGATCTGAATGGATGATGATCTTCATGTATGTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14523.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis