Browse Element(s) Details


OsAffx.14528.3.S1_at

Description tigr:9633.m00535
TID=OsAffx.14528.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0617011/11hypothetical protein
LOC_Os05g038003/11transposon protein, putative, unclassified
LOC_Os12g321403/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06140OsAffx.26755.1.S1_at11/115+3047971..3052410Lipase family protein, expressed
LOC_Os05g06150Os.55427.1.S1_at11/115+3061825..3063522pentatricopeptide, putative, expressed
LOC_Os05g06160Os.21893.3.A1_at5/115+3069639..3073374Trehalose-phosphatase family protein, expressed
LOC_Os05g06170OsAffx.14528.3.S1_x_at11/115+3074850..3076884hypothetical protein
LOC_Os05g06170OsAffx.14528.3.S1_at11/115+3074850..3076884hypothetical protein
LOC_Os05g06170Os.13877.1.S1_at3/115+3074850..3076884hypothetical protein
LOC_Os05g06170OsAffx.14528.1.S1_x_at3/115+3074850..3076884hypothetical protein
LOC_Os05g06170OsAffx.14528.2.S1_x_at1/115+3074850..3076884hypothetical protein
LOC_Os05g06180OsAffx.1516.1.S1_x_at1/115+3078207..3078608hypothetical protein
LOC_Os05g06190OsAffx.14568.2.S1_at11/115+3083758..3085703hypothetical protein
LOC_Os05g06200OsAffx.22179.1.S1_at6/115+3098006..3100924transposon protein, putative, Mutator sub-class
LOC_Os05g06200OsAffx.23752.1.S1_at1/115+3098006..3100924transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14528.3.S1_at--425--2631Chr05:3076208..3076315 (25 bp)
AACCTGAGGATCGTGAGTTTGCTTT
LOC_Os05g06170
OsAffx.14528.3.S1_at--415--8891Chr05:3076204..3076311 (25 bp)
TGAGGATCGTGAGTTTGCTTTGCAG
LOC_Os05g06170
OsAffx.14528.3.S1_at--85--9931Chr05:3076048..3076182 (25 bp)
TACGATGACCAGACTAATATGGTGG
LOC_Os05g06170
OsAffx.14528.3.S1_at--373--5491Chr05:3076024..3076048 (25 bp)
GAACAAATTATCCAACTGGAGATAA
LOC_Os05g06170
OsAffx.14528.3.S1_at--915--2551Chr05:3076011..3076035 (25 bp)
AACTGGAGATAAGAAGGTCTTCTGG
LOC_Os05g06170
OsAffx.14528.3.S1_at--986--6251Chr05:3075983..3076007 (25 bp)
GATGTCTCTGAATGGTATCAAGAAA
LOC_Os05g06170
OsAffx.14528.3.S1_at--964--1071Chr05:3075707..3075970 (25 bp)
AGGGCTTCCAAGCAAATTCATGCCA
LOC_Os05g06170
OsAffx.14528.3.S1_at--1080--4911Chr05:3075704..3075967 (25 bp)
GCTTCCAAGCAAATTCATGCCACAG
LOC_Os05g06170
OsAffx.14528.3.S1_at--135--133Chr05:1671162..1671186 (25 bp)
ATTCATGCCACAGAACACACCTGGT
LOC_Os05g03800
OsAffx.14528.3.S1_at--17--593Chr05:1671166..1671190 (25 bp)
ATGCCACAGAACACACCTGGTTAAT
LOC_Os05g03800
OsAffx.14528.3.S1_at--90--1433Chr05:1671173..1671197 (25 bp)
AGAACACACCTGGTTAATTATATGT
LOC_Os05g03800
Target Sequence 
AACCTGAGGATCGTGAGTTTGCTTTGCAGGAGGACTTTGAGTATGGGGTGTACGATGACCAGACTAATATGGTGGAACAA
ATTATCCAACTGGAGATAAGAAGGTCTTCTGGGAGGATGTCTCTGAATGGTATCAAGAAACTGAACCTCCTCAGGGCTTC
CAAGCAAATTCATGCCACAGAACACACCTGGTTAATTATATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14528.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis