Browse Element(s) Details


OsAffx.14557.1.S1_at

Description tigr:9633.m00476
TID=OsAffx.14557.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0543010/11hypothetical protein
LOC_Os04g037103/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g037402/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05390OsAffx.14556.1.S1_at11/115+2650647..2657552expressed protein
LOC_Os05g05390OsAffx.26617.5.S1_x_at2/115+2650647..2657552expressed protein
LOC_Os05g05400NANA5+2661786..2662555retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g05410NANA5+2663080..2665837retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05420OsAffx.22947.1.S1_x_at6/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05420OsAffx.22947.5.S1_x_at3/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05420OsAffx.22947.3.S1_x_at2/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05430OsAffx.14557.1.S1_at10/115+2677359..2677797hypothetical protein
LOC_Os05g05440Os.19380.1.S1_at11/115+2681413..2689941expressed protein
LOC_Os05g05450Os.18996.1.S1_at11/115+2691919..2694811MA3 domain-containing protein, putative, expressed
LOC_Os05g05460NANA5+2694161..2696328EF hand family protein, expressed
LOC_Os05g05470Os.4990.1.S1_at9/115+2696825..2701454T-complex protein 1, zeta subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14557.1.S1_at--273--5091Chr05:2677739..2677763 (25 bp)
GCACCGACGGAAGGGAGAAGAACAT
LOC_Os05g05430
OsAffx.14557.1.S1_at--920--8191Chr05:2677250..2677700 (25 bp)
GGAAGGATTGGAACCACACATATGT
NONE
OsAffx.14557.1.S1_at--256--7931Chr05:2677455..2677696 (25 bp)
GGATTGGAACCACACATATGTTCCA
LOC_Os05g05430
OsAffx.14557.1.S1_at--801--3571Chr05:2677441..2677464 (24 bp)
CATATGTTCCAATCCGAACTATCTA
LOC_Os05g05430
OsAffx.14557.1.S1_at--478--10696Chr04:1639656..1639675 (20 bp)
TTCCAATCCGAACTATCTATCTGTT
LOC_Os04g03740
OsAffx.14557.1.S1_at--711--5476Chr04:1635065..1635089 (25 bp)
GAACTATCTATCTGTTTAACACCCC
LOC_Os04g03710
OsAffx.14557.1.S1_at--524--8773Chr05:14633975..14633999 (25 bp)
TATCTGTTTAACACCCCCCGGCAAT
NONE
OsAffx.14557.1.S1_at--764--8213Chr04:1635091..1635115 (25 bp)
GGCAATCCCAACACGGGAACCAGGT
LOC_Os04g03710
OsAffx.14557.1.S1_at--1123--493Chr04:1635095..1635119 (25 bp)
ATCCCAACACGGGAACCAGGTTGAG
NONE
OsAffx.14557.1.S1_at--850--4373Chr04:1635098..1635122 (25 bp)
CCAACACGGGAACCAGGTTGAGATT
NONE
OsAffx.14557.1.S1_at--1024--2154Chr04:1635101..1635124 (24 bp)
ACACGGGAACCAGGTTGAGATTGCG
NONE
Target Sequence 
GCACCGACGGAAGGGAGAAGAACATTGAGGAGAAGGGGAAGGAGGGGTGGGAGAGGAGTGGGAGGAAGGATTGGAACCAC
ACATATGTTCCAATCCGAACTATCTATCTGTTTAACACCCCCCGGCAATCCCAACACGGGAACCAGGTTGAGATTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis