Browse Element(s) Details


OsAffx.14577.1.S1_at

Description tigr:9633.m00625
TID=OsAffx.14577.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0702010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06980Os.27328.1.S1_at11/115+3630683..3641564expressed protein
LOC_Os05g06990Os.15797.1.S1_at11/115+3649022..3651769protein kinase, putative, expressed
LOC_Os05g07000Os.50563.1.S1_at11/115+3652046..3656263RNA recognition motif family protein, expressed
LOC_Os05g07000Os.3748.1.S1_at1/115+3652046..3656263RNA recognition motif family protein, expressed
LOC_Os05g07010OsAffx.4266.1.S1_at11/115+3657667..3659300myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g07020OsAffx.14577.1.S1_at10/115+3659900..3663746hypothetical protein
LOC_Os05g07020Os.53408.1.A1_at1/115+3659900..3663746hypothetical protein
LOC_Os05g07030Os.6153.1.S1_at11/115+3667973..3675645arginyl-tRNA synthetase family protein, expressed
LOC_Os05g07040Os.51192.1.A1_a_at11/115+3675928..3680375PHD finger protein, putative, expressed
LOC_Os05g07050Os.4209.1.S1_a_at3/115+3682241..3692532Pre-mRNA processing splicing factor 8, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14577.1.S1_at--410--1371Chr05:3663482..3663506 (25 bp)
AGAGCATGTGGCGTCCTGAGTGATT
LOC_Os05g07020
OsAffx.14577.1.S1_at--860--3031Chr05:3663431..3663455 (25 bp)
AATCGGATGGAGTGCATGCTTCTTA
LOC_Os05g07020
OsAffx.14577.1.S1_at--705--31Chr05:3663346..3663370 (25 bp)
ATTGGTCTCTGTGCGAAATCTTGTT
LOC_Os05g07020
OsAffx.14577.1.S1_at--698--5971Chr05:3663299..3663323 (25 bp)
GAGAAAGTTCATTCACGCTACCTTC
LOC_Os05g07020
OsAffx.14577.1.S1_at--1077--4851Chr05:3663283..3663307 (25 bp)
GCTACCTTCTGCGTAATTTGCTAAA
LOC_Os05g07020
OsAffx.14577.1.S1_at--728--571Chr05:3663231..3663255 (25 bp)
ATCCATCTATAGCATCACACGTACG
LOC_Os05g07020
OsAffx.14577.1.S1_at--373--10631Chr05:3663187..3663211 (25 bp)
TTCGTACGAAGCTCACAAGGGACAT
LOC_Os05g07020
OsAffx.14577.1.S1_at--746--5671NONE
GACATCATCCGCCATCCGATAGGAG
NONE
OsAffx.14577.1.S1_at--898--271Chr05:3660340..3660364 (25 bp)
ATAGGAGCCGTTCCACTCCATGAAG
LOC_Os05g07020
OsAffx.14577.1.S1_at--650--711Chr05:3660292..3660316 (25 bp)
ATGATCAAATTGCTCTTCCGCCAAG
LOC_Os05g07020
OsAffx.14577.1.S1_at--1154--1691Chr05:3659939..3660284 (25 bp)
AGCCAACATTGGTCCTAATTCAGAT
LOC_Os05g07020
Target Sequence 
AGAGCATGTGGCGTCCTGAGTGATTTTGAAACTATCAATATGGATGACAGGAATCGGATGGAGTGCATGCTTCTTAGGTT
TAAGTCAACTAGGTTTAAAAGATTGGTCTCTGTGCAAAAACCAAGGGAAATCAAAGATTGGTCTCTGTGCGAAATCTTGT
TCATGGTTGATGATATTCTCATAGAGAAAGTTCATTCACGCTACCTTCTGCGTAATTTGCTAAAGAAGTGGTCTCCATAT
TTGAGAGGACAATCCATCTATAGCATCACACGTACGAAGCTCACAAGGTACATCATTCGTACGAAGCTCACAAGGGACAT
CATCCGCCATCCGATAGGAGCCGTTCCACTCCATGAAGCTGCTGAACGGTTCTCTGTTGACATGATCAAATTGCTCTTCC
GCCAAGGCGCTTCAGCCAACATTGGTCCTAATTCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis