Browse Element(s) Details


OsAffx.14579.1.S1_at

Description tigr:9633.m00653
TID=OsAffx.14579.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0727010/11LOB domain protein 13, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07220Os.53432.1.S1_at10/115+3791325..3797787Kelch motif family protein, expressed
LOC_Os05g07230OsAffx.26768.1.S1_at11/115+3802870..3803738hypothetical protein
LOC_Os05g07240OsAffx.14578.1.S1_x_at11/115+3811047..3811559expressed protein
LOC_Os05g07240Os.8693.1.S1_x_at1/115+3811047..3811559expressed protein
LOC_Os05g07250OsAffx.27250.3.S1_x_at11/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.4.S1_s_at11/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.1.S1_x_at5/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.1.S1_at3/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.22147.1.S1_x_at2/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.4.S1_x_at1/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07260Os.24661.1.S1_at11/115+3817701..3821188phosphatidylinositolglycan, putative, expressed
LOC_Os05g07270OsAffx.14579.1.S1_at10/115+3821793..3823499LOB domain protein 13, putative
LOC_Os05g07270OsAffx.28759.1.S1_x_at1/115+3821793..3823499LOB domain protein 13, putative
LOC_Os05g07280Os.55964.1.S1_at10/115+3836189..3837276expressed protein
LOC_Os05g07290Os.27639.1.S1_x_at8/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290OsAffx.8980.1.S1_at6/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290Os.53731.1.S1_at3/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290Os.2987.3.S1_x_at1/115+3839426..3844772transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009799biological_processdetermination of symmetry
GO:0009954biological_processproximal/distal pattern formation
GO:0009965biological_processleaf morphogenesis
GO:0010016biological_processshoot morphogenesis
GO:0048441biological_processpetal development
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14579.1.S1_at--11--8371Chr05:3823416..3823440 (25 bp)
GGCGGTGAACACGATAACGCCGTGC
LOC_Os05g07270
OsAffx.14579.1.S1_at--804--8971Chr05:3823411..3823435 (25 bp)
TGAACACGATAACGCCGTGCGCGGC
LOC_Os05g07270
OsAffx.14579.1.S1_at--1147--971Chr05:3823357..3823381 (25 bp)
AGGAGTGCCCCTTCTCGCCGTACTT
LOC_Os05g07270
OsAffx.14579.1.S1_at--441--631NONE
ATGCTCCTGGAGGTGCACGAGAGCC
NONE
OsAffx.14579.1.S1_at--727--4431Chr05:3822080..3822104 (25 bp)
GCCATCCTCACCTTGCAGCAGCAGG
LOC_Os05g07270
OsAffx.14579.1.S1_at--717--1511Chr05:3822064..3822088 (25 bp)
AGCAGCAGGTCCAGGCCCTCGAGGC
LOC_Os05g07270
OsAffx.14579.1.S1_at--167--4571Chr05:3822022..3822046 (25 bp)
GCGCCGACATCGTCAGGCACAAGTA
LOC_Os05g07270
OsAffx.14579.1.S1_at--843--2091Chr05:3822016..3822040 (25 bp)
ACATCGTCAGGCACAAGTACCGCCT
LOC_Os05g07270
OsAffx.14579.1.S1_at--800--1591Chr05:3821920..3821944 (25 bp)
AGCTGCCCGTTGCTGGCACCATGGG
LOC_Os05g07270
OsAffx.14579.1.S1_at--564--4651Chr05:3821828..3821852 (25 bp)
GCGTCGAGCTCCACGGACTATAGCT
LOC_Os05g07270
OsAffx.14579.1.S1_at--1023--5891Chr05:3821823..3821847 (25 bp)
GAGCTCCACGGACTATAGCTCCATC
LOC_Os05g07270
Target Sequence 
GGCGGTGAACACGATAACGCCGTGCGCGGCGTGCAAGCTGCTCCGGCGGCGGTGCGCGCAGGAGTGCCCCTTCTCGCCGT
ACTTCTCGCCGCTGGAGCCGCACAAGTTCGCCTCCGTGCACAAGGTCTTCGGCGCCAGCAACGTCTCCAAGATGCTCCTG
GAGGTGCACGAGAGCCAGCGCGGCGACGCGGCGAACAGCCTGGTGTACGAGGCCAACCTGCGGCTGCGCGACCCGGTGTA
CGGCTGCATGGGCGCCATCCTCACCTTGCAGCAGCAGGTCCAGGCCCTCGAGGCCGAGCTCGCCGCCGTCCGCGCCGACA
TCGTCAGGCACAAGTACCGCCTCCCCTCCGCCGCCGCCGTGCTCCCTTCCTCCCACGCCTCGCACCTCCTCGCCGCCGCC
GCCGCCGCACGCCAGCTGCCCGTTGCTGGCACCATGGGGGTAGTGACGACGGCGACGCTGCCGGCATCGGCGTCGTCGTC
GTCGACGACGGCGGTGTACGCCGCCGCGTCGAGCTCCACGGACTATAGCTCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis