Browse Element(s) Details


OsAffx.14591.1.S1_at

Description tigr:9633.m00750
TID=OsAffx.14591.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0834011/11hypothetical protein
LOC_Os11g342201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08290NANA5+4499414..4506161retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g08300Os.46314.2.S1_x_at1/115+4508176..4511280retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g08300Os.10731.2.A1_at1/115+4508176..4511280retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g08310OsAffx.16111.1.S1_at1/115+4513701..4520083retrotransposon protein, putative, unclassified
LOC_Os05g08310OsAffx.3363.1.S1_at1/115+4513701..4520083retrotransposon protein, putative, unclassified
LOC_Os05g08310OsAffx.22699.1.S1_x_at1/115+4513701..4520083retrotransposon protein, putative, unclassified
LOC_Os05g08320OsAffx.26785.1.S1_at11/115+4521986..4523234hypothetical protein
LOC_Os05g08330NANA5+4524280..4524820hypothetical protein
LOC_Os05g08340OsAffx.14591.1.S1_at11/115+4526278..4527725hypothetical protein
LOC_Os05g08350Os.8122.1.S1_at11/115+4529258..4535067F-box domain containing protein, expressed
LOC_Os05g08350OsAffx.4275.1.S1_at10/115+4529258..4535067F-box domain containing protein, expressed
LOC_Os05g08360Os.53192.1.S1_s_at11/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08360OsAffx.4276.1.S1_s_at11/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08360Os.47666.1.S1_at1/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08370Os.10183.1.S1_at11/115+4543263..4549377Cellulose synthase A catalytic subunit 1, putative, expressed
LOC_Os05g08370Os.10183.1.S2_at11/115+4543263..4549377Cellulose synthase A catalytic subunit 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14591.1.S1_at--249--6471Chr05:4527663..4527687 (25 bp)
GATAAGATCTGCAACACCCATGTCA
LOC_Os05g08340
OsAffx.14591.1.S1_at--768--2471Chr05:4527651..4527675 (25 bp)
AACACCCATGTCAAGCGGCCAAAAG
LOC_Os05g08340
OsAffx.14591.1.S1_at--882--7074Chr09:1888056..1888159 (25 bp)
GTCAAGCGGCCAAAAGGTACAAGAA
NONE
OsAffx.14591.1.S1_at--953--2211Chr05:4527545..4527569 (25 bp)
ACAAGAAGCGAGTATTTCGCCGGGA
LOC_Os05g08340
OsAffx.14591.1.S1_at--1119--191Chr05:4527532..4527556 (25 bp)
ATTTCGCCGGGAGTTTGTGTCATCA
LOC_Os05g08340
OsAffx.14591.1.S1_at--743--6071Chr05:4527522..4527546 (25 bp)
GAGTTTGTGTCATCATGGACGGCCG
LOC_Os05g08340
OsAffx.14591.1.S1_at--509--4211Chr05:4527500..4527524 (25 bp)
CCGCCGTAGCGGATGCGGCCATGCT
LOC_Os05g08340
OsAffx.14591.1.S1_at--555--4711Chr05:4527491..4527510 (20 bp)
GCGGCCATGCTCCATCTGGTTTTTT
LOC_Os05g08340
OsAffx.14591.1.S1_at--383--10315Chr11:19536075..19536094 (20 bp)
TTTCGAGGAGCATAGAAGCACTTCT
NONE
OsAffx.14591.1.S1_at--386--10011Chr05:4527136..4527160 (25 bp)
TAGAAGCACTTCTCGTAACCGTAAT
LOC_Os05g08340
OsAffx.14591.1.S1_at--764--1491Chr05:4527132..4527156 (25 bp)
AGCACTTCTCGTAACCGTAATCATG
LOC_Os05g08340
Target Sequence 
GATAAGATCTGCAACACCCATGTCAAGCGGCCAAAAGGTACAAGAAGCGAGTATTTCGCCGGGAGTTTGTGTCATCATGG
ACGGCCGCCGTAGCGGATGCGGCCATGCTCCATCTGGTTTTTTTTCGAGGAGCATAGAAGCACTTCTCGTAACCGTAATC
ATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis