Browse Element(s) Details


OsAffx.14644.1.S1_at

Description tigr:9633.m01040
TID=OsAffx.14644.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1174011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11700OsAffx.14643.1.S1_at11/115+6626452..6627639pentatricopeptide, putative, expressed
LOC_Os05g11710Os.1382.1.S1_at11/115+6628868..663112960S ribosomal protein L11, putative, expressed
LOC_Os05g11720Os.46933.1.S1_at11/115+6632074..6635697Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g11730Os.21185.1.S1_at11/115+6636795..6640807Shaggy-related protein kinase iota, putative, expressed
LOC_Os05g11740OsAffx.14644.1.S1_at11/115+6643031..6643524hypothetical protein
LOC_Os05g11750Os.48931.1.S1_at11/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11750Os.48931.2.S1_at9/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11760OsAffx.4307.1.S1_at11/115+6654523..6655526hypothetical protein
LOC_Os05g11770Os.17859.1.S1_a_at11/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.10381.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.52782.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14644.1.S1_at--563--9991Chr05:6643456..6643480 (25 bp)
TAGCCACACTAGTAGCCAGGGCTCG
LOC_Os05g11740
OsAffx.14644.1.S1_at--1148--6951Chr05:6643445..6643469 (25 bp)
GTAGCCAGGGCTCGAACGCTATGTT
LOC_Os05g11740
OsAffx.14644.1.S1_at--315--8311Chr05:6643437..6643461 (25 bp)
GGCTCGAACGCTATGTTGGGTAAGA
LOC_Os05g11740
OsAffx.14644.1.S1_at--544--10711Chr05:6643422..6643446 (25 bp)
TTGGGTAAGAGGAGGCTCGACGCCA
LOC_Os05g11740
OsAffx.14644.1.S1_at--1030--3471Chr05:6643399..6643423 (25 bp)
CATGGACTTCAGCACCATGGTTTTG
LOC_Os05g11740
OsAffx.14644.1.S1_at--583--8271Chr05:6643382..6643406 (25 bp)
TGGTTTTGGACCTCGGCGCCAAACA
LOC_Os05g11740
OsAffx.14644.1.S1_at--876--5832Chr07:23992103..23992211 (24 bp)
GACCTCGGCGCCAAACAAGGATCAA
NONE
OsAffx.14644.1.S1_at--620--9451Chr05:6643370..6643394 (25 bp)
TCGGCGCCAAACAAGGATCAAGGGA
LOC_Os05g11740
OsAffx.14644.1.S1_at--240--6431Chr05:6643355..6643379 (25 bp)
GATCAAGGGAGGATTCAAACCTGAA
LOC_Os05g11740
OsAffx.14644.1.S1_at--787--1591Chr05:6643075..6643099 (25 bp)
AGCTCCTCTGGTTCTGTACACAGTG
LOC_Os05g11740
OsAffx.14644.1.S1_at--616--4291Chr05:6643071..6643095 (25 bp)
CCTCTGGTTCTGTACACAGTGAGGG
LOC_Os05g11740
Target Sequence 
TAGCCACACTAGTAGCCAGGGCTCGAACGCTATGTTGGGTAAGAGGAGGCTCGACGCCATGGACTTCAGCACCATGGTTT
TGGACCTCGGCGCCAAACAAGGATCAAGGGAGGATTCAAACCTGAAAAGACCACCACCAATCAGCTCCTCTGGTTCTGTA
CACAGTGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis