Browse Element(s) Details


Os.1382.1.S1_at

Description gb:AF022736.1
DB_XREF= gi:2570506
TID=Os.1382.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.1382 (NCBI UniGene Cluster)
DEF=Oryza sativa ribosomal protein mRNA, complete cds.
PROD=ribosomal protein
FL= gb:AF022736.1 gb:AK070605.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1171011/1160S ribosomal protein L11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11680NANA5+6603986..6606054retrotransposon, putative, centromere-specific
LOC_Os05g11690Os.45902.1.A1_x_at4/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.45976.1.S1_at3/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.45976.1.S1_x_at2/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690OsAffx.727.1.S1_x_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.10263.1.S1_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690OsAffx.22442.1.S1_x_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11700OsAffx.14643.1.S1_at11/115+6626452..6627639pentatricopeptide, putative, expressed
LOC_Os05g11710Os.1382.1.S1_at11/115+6628868..663112960S ribosomal protein L11, putative, expressed
LOC_Os05g11720Os.46933.1.S1_at11/115+6632074..6635697Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g11730Os.21185.1.S1_at11/115+6636795..6640807Shaggy-related protein kinase iota, putative, expressed
LOC_Os05g11740OsAffx.14644.1.S1_at11/115+6643031..6643524hypothetical protein
LOC_Os05g11750Os.48931.1.S1_at11/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11750Os.48931.2.S1_at9/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11760OsAffx.4307.1.S1_at11/115+6654523..6655526hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007049biological_processcell cycle
GO:0010102biological_processlateral root morphogenesis
GO:0005842cellular_componentcytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1382.1.S1_at--547--6971Chr05:6630636..6630660 (25 bp)
GTACGACCCGTCAACTGGTATTTAT
LOC_Os05g11710
Os.1382.1.S1_at--1100--4191Chr05:6630642..6630666 (25 bp)
CCCGTCAACTGGTATTTATGGCATG
LOC_Os05g11710
Os.1382.1.S1_at--867--2931Chr05:6630811..6630835 (25 bp)
AAGGCCCAAGCAAACACGTCGTAAT
LOC_Os05g11710
Os.1382.1.S1_at--586--3271Chr05:6630821..6630845 (25 bp)
CAAACACGTCGTAATTGGCAAGGGT
LOC_Os05g11710
Os.1382.1.S1_at--853--5111Chr05:6630838..6630862 (25 bp)
GCAAGGGTTTAACCAGTTATCCTGT
LOC_Os05g11710
Os.1382.1.S1_at--956--5231Chr05:6630885..6630909 (25 bp)
GAATCATGGAACTGTCTTTCTTGAA
LOC_Os05g11710
Os.1382.1.S1_at--381--10311Chr05:6630901..6630925 (25 bp)
TTTCTTGAAAGCCAAATGCACTGTC
LOC_Os05g11710
Os.1382.1.S1_at--820--3331Chr05:6630919..6630943 (25 bp)
CACTGTCAATTTTGCCTCTGTTGGA
LOC_Os05g11710
Os.1382.1.S1_at--808--3771Chr05:6630934..6630958 (25 bp)
CTCTGTTGGAGTTGACCTGCGTCTA
LOC_Os05g11710
Os.1382.1.S1_at--730--5831Chr05:6630947..6630971 (25 bp)
GACCTGCGTCTATATTTCCATTAAA
LOC_Os05g11710
Os.1382.1.S1_at--999--6951Chr05:6631081..6631105 (25 bp)
GTAGCAACAGTCAAATTGTTCATTT
LOC_Os05g11710
Target Sequence 
GTACGACCCGTCAACTGGTATTTATGGCATGGACTTCTATGTTGTTCTTGAGCGTGCTGGATACCGTGTTGCTCGCCGGC
GCAGGTGCAAGTCCCGTGTTGGAATCCAGCACAGGGTGACCAAGGAAGATGCCATGAAGTGGTTCCAGGTCAAGTATGAG
GGTGTCATCCTCAACAAGGCCCAAGCAAACACGTCGTAATTGGCAAGGGTTTAACCAGTTATCCTGTAGAATTAAGTGAG
GGTTCATTTGAATCATGGAACTGTCTTTCTTGAAAGCCAAATGCACTGTCAATTTTGCCTCTGTTGGAGTTGACCTGCGT
CTATATTTCCATTAAATGCTTAATGATATCCTTGTTTTAAATCTTAATATTAAGGCAGACTTGGAATCAATCCACCCGCT
TTGTTACCTGTATTTCTGCCTTATCCTGTGTCAGGCAAAAGCTAAGTAGCAACAGTCAAATTGTTCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis