Browse Element(s) Details


Os.21185.1.S1_at

Description gb:AK102147.1
DB_XREF= gi:32987356
TID=Os.21185.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086C10, full insert sequence.
FL= gb:AK102147.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1173011/11Shaggy-related protein kinase iota, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11690Os.45902.1.A1_x_at4/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.45976.1.S1_at3/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.45976.1.S1_x_at2/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690OsAffx.727.1.S1_x_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.10263.1.S1_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690OsAffx.22442.1.S1_x_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11700OsAffx.14643.1.S1_at11/115+6626452..6627639pentatricopeptide, putative, expressed
LOC_Os05g11710Os.1382.1.S1_at11/115+6628868..663112960S ribosomal protein L11, putative, expressed
LOC_Os05g11720Os.46933.1.S1_at11/115+6632074..6635697Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g11730Os.21185.1.S1_at11/115+6636795..6640807Shaggy-related protein kinase iota, putative, expressed
LOC_Os05g11740OsAffx.14644.1.S1_at11/115+6643031..6643524hypothetical protein
LOC_Os05g11750Os.48931.1.S1_at11/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11750Os.48931.2.S1_at9/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11760OsAffx.4307.1.S1_at11/115+6654523..6655526hypothetical protein
LOC_Os05g11770Os.17859.1.S1_a_at11/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.10381.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.52782.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009825biological_processmultidimensional cell growth
GO:0009933biological_processmeristem organization
GO:0009965biological_processleaf morphogenesis
GO:0016310biological_processphosphorylation
GO:0042538biological_processhyperosmotic salinity response
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004696molecular_functionglycogen synthase kinase 3 activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21185.1.S1_at--1146--2151Chr05:6637295..6637319 (25 bp)
ACACCACCAGACCTTTTGTTGGATC
LOC_Os05g11730
Os.21185.1.S1_at--557--10771Chr05:6637280..6637304 (25 bp)
TTGTTGGATCGTTTTCGCGGAACCG
LOC_Os05g11730
Os.21185.1.S1_at--928--1291Chr05:6637230..6637254 (25 bp)
AGATGATTCTTCGAATCCCCGCAAA
LOC_Os05g11730
Os.21185.1.S1_at--696--5331Chr05:6637106..6637130 (25 bp)
GAAGTTTTTGCATCGCGAGTTTGGT
LOC_Os05g11730
Os.21185.1.S1_at--133--8971Chr05:6637079..6637103 (25 bp)
TGAAACCGGGATCAGCTGGTATGAC
LOC_Os05g11730
Os.21185.1.S1_at--780--1271Chr05:6637035..6637059 (25 bp)
AGATCCATGACTGAGTTTTCTTTCA
LOC_Os05g11730
Os.21185.1.S1_at--954--6631Chr05:6636959..6636983 (25 bp)
GTTGTAACCTGTAAACTGCCACTGT
LOC_Os05g11730
Os.21185.1.S1_at--599--2391Chr05:6636947..6636971 (25 bp)
AAACTGCCACTGTTTTGTTCACATT
LOC_Os05g11730
Os.21185.1.S1_at--740--6311Chr05:6636895..6636919 (25 bp)
GATGAATAACTCTCCTTGTAACCTT
LOC_Os05g11730
Os.21185.1.S1_at--132--10671Chr05:6636865..6636889 (25 bp)
TTCCATCCTTGACTGTTTACCTTAA
LOC_Os05g11730
Os.21185.1.S1_at--1072--6451Chr05:6636851..6636875 (25 bp)
GTTTACCTTAAAGCCGTGGACAGTG
LOC_Os05g11730
Target Sequence 
ACACCACCAGACCTTTTGTTGGATCGTTTTCGCGGAACCGGTGAAGTTCACATGAAGGCTGAGTCAGATGATTCTTCGAA
TCCCCGCAAAACAAGAAGAATAGAAAATATGATTCCTCAGATGATGATATGCAAATGCTTCGTTGGAAGTTCAATTCAAT
CATCGAAGAAGAACAACATTGTAAATCGAGAAGTTTTTGCATCGCGAGTTTGGTAGTGAAACCGGGATCAGCTGGTATGA
CGGAGGAAACCGAAATGTTTAGATCCATGACTGAGTTTTCTTTCATTTTTTTTGCCCAATTGTAACAGAAGAATATAGTT
CCCTAATGTAGGCGTAGTTGTAACCTGTAAACTGCCACTGTTTTGTTCACATTCCATGATGTAAATGCCACCATGCCTNT
GATGAATAACTCTCCTTGTAACCTTGTTCCTTCCATCCTTGACTGTTTACCTTAAAGCCGTGGACAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis