Browse Element(s) Details


Os.46933.1.S1_at

Description gb:AK070191.1
DB_XREF= gi:32980215
TID=Os.46933.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-009-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042J24, full insert sequence.
FL= gb:AK070191.1 gb:AK104023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1172011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11690Os.45902.1.A1_x_at4/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.45976.1.S1_at3/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.45976.1.S1_x_at2/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690OsAffx.727.1.S1_x_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.10263.1.S1_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690OsAffx.22442.1.S1_x_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11700OsAffx.14643.1.S1_at11/115+6626452..6627639pentatricopeptide, putative, expressed
LOC_Os05g11710Os.1382.1.S1_at11/115+6628868..663112960S ribosomal protein L11, putative, expressed
LOC_Os05g11720Os.46933.1.S1_at11/115+6632074..6635697Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g11730Os.21185.1.S1_at11/115+6636795..6640807Shaggy-related protein kinase iota, putative, expressed
LOC_Os05g11740OsAffx.14644.1.S1_at11/115+6643031..6643524hypothetical protein
LOC_Os05g11750Os.48931.1.S1_at11/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11750Os.48931.2.S1_at9/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11760OsAffx.4307.1.S1_at11/115+6654523..6655526hypothetical protein
LOC_Os05g11770Os.17859.1.S1_a_at11/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.10381.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.52782.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46933.1.S1_at--1116--4071Chr05:6635379..6635403 (25 bp)
CGAGCACGGGCTGCAGGATTTGCCA
LOC_Os05g11720
Os.46933.1.S1_at--1151--1391Chr05:6632448..6632472 (25 bp)
AGACGGCGGAGAACATCACCGGCTG
LOC_Os05g11720
Os.46933.1.S1_at--1083--5291Chr05:6632365..6632389 (25 bp)
GAAGGCTCCTCCAAGGCATGCAGCG
LOC_Os05g11720
Os.46933.1.S1_at--247--1631Chr05:6632344..6632368 (25 bp)
AGCGGCTTCTGCAAGAGCCACTCAT
LOC_Os05g11720
Os.46933.1.S1_at--980--1691Chr05:6632329..6632353 (25 bp)
AGCCACTCATTATGCAATCTCTTGA
LOC_Os05g11720
Os.46933.1.S1_at--644--3051Chr05:6632314..6632338 (25 bp)
AATCTCTTGATTGCGTGCTTGATCA
LOC_Os05g11720
Os.46933.1.S1_at--740--31Chr05:6632290..6632314 (25 bp)
ATTGTAATCGTCTTGCCATGGTTGC
LOC_Os05g11720
Os.46933.1.S1_at--345--831Chr05:6632273..6632297 (25 bp)
ATGGTTGCTCCATAATCATGTGCTT
LOC_Os05g11720
Os.46933.1.S1_at--704--3071Chr05:6632260..6632284 (25 bp)
AATCATGTGCTTTGAGATCCTCTAA
LOC_Os05g11720
Os.46933.1.S1_at--268--6031Chr05:6632247..6632271 (25 bp)
GAGATCCTCTAAATTGCCATTTTGG
LOC_Os05g11720
Os.46933.1.S1_at--276--6513Chr08:13783751..13783834 (25 bp)
GATATAGCGATCCAATTTCTTGTTT
NONE
Target Sequence 
CGAGCACGGGCTGCAGGATTTGCCACCTCGGCGGCGGCGGCGACGGCGAGATGGCGGCGGAGAGCGGGAGCGGGCGGCTG
GTGAGGCTCGGGTGCGGCTGCCGCGGCGAGCTGGCGGCGGCGCACCGGCGTTGCGCCGAGGCGTGGTTCTCCGTCAGGGG
CAACAGGCGCTGCGAGATCTGCGGCGAGACGGCGGAGAACATCACCGGCTGGGGCGGCGGAGGCAAGGAGTTCATGAAGC
GGTGGCACGCGACGGCGGGCGTCGACGTCGAAGGCTCCTCCAAGGCATGCAGCGGCTTCTGCAAGAGCCACTCATTATGC
AATCTCTTGATTGCGTGCTTGATCATTGTAATCGTCTTGCCATGGTTGCTCCATAATCATGTGCTTTGAGATCCTCTAAA
TTGCCATTTTGGATAAATCATTTTCAGCTATTCAGATGAGATGGCTATTTTAGGGTGTGTTTGGTTCACAGTCATGCATG
GATGGGACCATATTTTGTTGGATACGACGATCCAATTTTTTATTTGGTTTATATAGATATAGCGATCCAATTTCTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis