Browse Element(s) Details


OsAffx.14643.1.S1_at

Description tigr:9633.m01035
TID=OsAffx.14643.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F12M16.23
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1170011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11670NANA5+6600232..6602141transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11680NANA5+6603986..6606054retrotransposon, putative, centromere-specific
LOC_Os05g11690Os.45902.1.A1_x_at4/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.45976.1.S1_at3/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.45976.1.S1_x_at2/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690OsAffx.727.1.S1_x_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.10263.1.S1_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690OsAffx.22442.1.S1_x_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11700OsAffx.14643.1.S1_at11/115+6626452..6627639pentatricopeptide, putative, expressed
LOC_Os05g11710Os.1382.1.S1_at11/115+6628868..663112960S ribosomal protein L11, putative, expressed
LOC_Os05g11720Os.46933.1.S1_at11/115+6632074..6635697Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g11730Os.21185.1.S1_at11/115+6636795..6640807Shaggy-related protein kinase iota, putative, expressed
LOC_Os05g11740OsAffx.14644.1.S1_at11/115+6643031..6643524hypothetical protein
LOC_Os05g11750Os.48931.1.S1_at11/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11750Os.48931.2.S1_at9/115+6645812..6651263Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14643.1.S1_at--476--211Chr05:6627189..6627213 (25 bp)
ATTTGCAGCGCTCGATGACATGCAG
LOC_Os05g11700
OsAffx.14643.1.S1_at--1054--5711Chr05:6627232..6627256 (25 bp)
GACTCGGTGAGCTATAATACACTGG
LOC_Os05g11700
OsAffx.14643.1.S1_at--902--331Chr05:6627248..6627272 (25 bp)
ATACACTGGTTGGTGGTCTATGCAA
LOC_Os05g11700
OsAffx.14643.1.S1_at--680--6051Chr05:6627298..6627322 (25 bp)
GAGTTGGTTGAGGATATGCCACGAA
LOC_Os05g11700
OsAffx.14643.1.S1_at--1154--8751Chr05:6627339..6627363 (25 bp)
TGTAGTCACCTACAGGAGGCTGTTT
LOC_Os05g11700
OsAffx.14643.1.S1_at--759--6011Chr05:6627415..6627439 (25 bp)
GAGATGGTATTCAAGGGCTTTGCAC
LOC_Os05g11700
OsAffx.14643.1.S1_at--579--3211Chr05:6627426..6627450 (25 bp)
CAAGGGCTTTGCACCAAGCAAGGAT
LOC_Os05g11700
OsAffx.14643.1.S1_at--725--6091Chr05:6627505..6627529 (25 bp)
GAGTCAGTGTTGTGCCAATTGGCTA
LOC_Os05g11700
OsAffx.14643.1.S1_at--425--3891Chr05:6627518..6627542 (25 bp)
GCCAATTGGCTAGCGTTAACGCCTT
LOC_Os05g11700
OsAffx.14643.1.S1_at--1081--9931Chr05:6627528..6627552 (25 bp)
TAGCGTTAACGCCTTGGAATCAAGT
LOC_Os05g11700
OsAffx.14643.1.S1_at--948--2991Chr05:6627567..6627591 (25 bp)
AATGAGTGGTGTGCTCCATGATCCT
LOC_Os05g11700
Target Sequence 
ATTTGCAGCGCTCGATGACATGCAGAAGGGTGGGTGCAAGCCGGACTCGGTGAGCTATAATACACTGGTTGGTGGTCTAT
GCAAGATGGGGCGGTGGCGGGATGCAAGTGAGTTGGTTGAGGATATGCCACGAAGGGGATGCCGTCCTGATGTAGTCACC
TACAGGAGGCTGTTTGATGGGATTTGTGATGCTGGGGGGTTCAGCGAGGCGAGGAGGGTTTTCAATGAGATGGTATTCAA
GGGCTTTGCACCAAGCAAGGATGGTGTGAGGAAATTTGTTGCATGGATTGAGAGGGAAGGAGATGCGGCGTCACTGGAGT
CAGTGTTGTGCCAATTGGCTAGCGTTAACGCCTTGGAATCAAGTGAGTGGGAGAAGGCAATGAGTGGTGTGCTCCATGAT
CCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14643.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis