Browse Element(s) Details


OsAffx.14810.1.S1_at

Description tigr:9633.m02208
TID=OsAffx.14810.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2469011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24670NANA5+14195613..14197765retrotransposon protein, putative, unclassified
LOC_Os05g24680OsAffx.14809.1.S1_at11/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24680OsAffx.20689.1.A1_x_at2/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24680Os.23638.1.A1_x_at1/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24680OsAffx.20673.1.A1_x_at1/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24680Os.8606.1.S1_at1/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24690OsAffx.14810.1.S1_at11/115+14216765..14227924expressed protein
LOC_Os05g24700NANA5+14229844..14230611hypothetical protein
LOC_Os05g24710OsAffx.19542.3.S1_x_at2/115+14239028..14244421retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24710OsAffx.11259.1.S1_at1/115+14239028..14244421retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24710OsAffx.18086.1.S1_x_at1/115+14239028..14244421retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24720Os.25754.2.S1_x_at4/115+14251461..14254942retrotransposon protein, putative, unclassified
LOC_Os05g24720Os.53479.1.S1_x_at1/115+14251461..14254942retrotransposon protein, putative, unclassified
LOC_Os05g24720OsAffx.31069.2.S1_x_at1/115+14251461..14254942retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14810.1.S1_at--326--5711Chr05:14217752..14217776 (25 bp)
GACTCTAGTAGACCTCATCTTCTGA
LOC_Os05g24690
OsAffx.14810.1.S1_at--971--7171Chr05:14217726..14217750 (25 bp)
GTCTGGTCGGATGACACTATCTTCT
LOC_Os05g24690
OsAffx.14810.1.S1_at--317--10171Chr05:14217709..14217733 (25 bp)
TATCTTCTGCCACATGTTCTGTAGA
LOC_Os05g24690
OsAffx.14810.1.S1_at--139--6491Chr05:14217681..14217705 (25 bp)
GATAGCATCACTTGCAGCATCTATG
LOC_Os05g24690
OsAffx.14810.1.S1_at--425--1251Chr05:14217634..14217658 (25 bp)
AGTTGGTTCGTCTTCTGTATGAGCA
LOC_Os05g24690
OsAffx.14810.1.S1_at--997--1251Chr05:14217610..14217634 (25 bp)
AGATTCTGCCAACAATGCTGCTTTC
LOC_Os05g24690
OsAffx.14810.1.S1_at--836--10231Chr05:14217525..14217549 (25 bp)
TTTGGCATATGTTCTCCTTGTTTCT
LOC_Os05g24690
OsAffx.14810.1.S1_at--753--7051Chr05:14217385..14217409 (25 bp)
GTAACATTGAGCTTGGCTGTGGCCA
LOC_Os05g24690
OsAffx.14810.1.S1_at--480--4731Chr05:14217370..14217394 (25 bp)
GCTGTGGCCAGGTCACTTGGAGAAC
LOC_Os05g24690
OsAffx.14810.1.S1_at--580--10191Chr05:14217339..14217363 (25 bp)
TATATGTTTTGTGGGCTTGCTGGTC
LOC_Os05g24690
OsAffx.14810.1.S1_at--266--10711Chr05:14217323..14217347 (25 bp)
TTGCTGGTCGACTTTGCGCCAACAT
LOC_Os05g24690
Target Sequence 
GACTCTAGTAGACCTCATCTTCTGAAGTCTGGTCGGATGACACTATCTTCTGCCACATGTTCTGTAGAGCAGATAGCATC
ACTTGCAGCATCTATGCTTTGTCATGCTGGTGGAATAAAGTTGGTTCGTCTTCTGTATGAGCAGATTCTGCCAACAATGC
TGCTTTCAGCTGGTGAAGCAAGGCTGGGTTCTGCTGGACCAGTGTGCAGTAGTTTCGAAGGATTTGCTTTGGCATATGTT
CTCCTTGTTTCTGGGGCCAGCACCTGGGGAGTAGGAGAAACCTCCCCAGTTTATACTTCCGTATACACATCGAAGAGGCA
ACGGGTTGTAGATAGGCACTTGGAGTTTGTCGCCAATGTAATGCAGGGTAACATTGAGCTTGGCTGTGGCCAGGTCACTT
GGAGAACCTATGTTATATGTTTTGTGGGCTTGCTGGTCGACTTTGCGCCAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis