Browse Element(s) Details


OsAffx.14859.1.S1_x_at

Description tigr:9633.m02575
TID=OsAffx.14859.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AdenosineAMP deaminase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2818010/11AMP deaminase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28120Os.50584.1.S1_at4/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120Os.14919.1.S1_at4/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120Os.56216.1.S1_at2/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120OsAffx.29313.1.S1_at1/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28129OsAffx.27053.1.S1_at11/115+16376790..16378007hypothetical protein
LOC_Os05g28140OsAffx.27054.1.S1_at11/115+16383253..16383921hypothetical protein
LOC_Os05g28150NANA5+16388498..16388778hypothetical protein
LOC_Os05g28170Os.50328.1.S1_at11/115+16389895..16394689expressed protein
LOC_Os05g28170Os.50328.2.S1_x_at11/115+16389895..16394689expressed protein
LOC_Os05g28180Os.9020.1.S1_at11/115+16399487..16407399AMP deaminase, putative, expressed
LOC_Os05g28180OsAffx.14859.1.S1_x_at10/115+16399487..16407399AMP deaminase, putative, expressed
LOC_Os05g28190Os.4776.1.S1_at11/115+16424800..16428468RanBP1 domain containing protein, expressed
LOC_Os05g28190Os.18091.1.S1_at1/115+16424800..16428468RanBP1 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009168biological_processpurine ribonucleoside monophosphate biosynthesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0003876molecular_functionAMP deaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14859.1.S1_x_at--400--2511Chr05:16402217..16402241 (25 bp)
AACATTTTCCTTCCTCTGTTTGAGG
LOC_Os05g28180
OsAffx.14859.1.S1_x_at--521--10271Chr05:16402199..16402223 (25 bp)
TTTGAGGTCACCATTGATCCAGCTT
LOC_Os05g28180
OsAffx.14859.1.S1_x_at--961--1551Chr05:16402165..16402189 (25 bp)
AGCTTCACGTCTTCCTAAAGCAGGT
LOC_Os05g28180
OsAffx.14859.1.S1_x_at--823--2711Chr05:16401464..16401488 (25 bp)
AAGCATATGCCTACACCTGAACAAT
LOC_Os05g28180
OsAffx.14859.1.S1_x_at--134--8731Chr05:16401432..16401456 (25 bp)
TGTCTTCAACCCAGCATTTTCATAT
LOC_Os05g28180
OsAffx.14859.1.S1_x_at--22--8071Chr05:16401169..16401193 (25 bp)
GGAGACATCGATCACTTGGCAGCAA
LOC_Os05g28180
OsAffx.14859.1.S1_x_at--1090--8251Chr05:16401152..16401176 (25 bp)
GGCAGCAACATTTCTTCTTTGTCAC
LOC_Os05g28180
OsAffx.14859.1.S1_x_at--663--8151Chr05:16401102..16401126 (25 bp)
GGAAATCTCCTGTGCTTCAATATCT
LOC_Os05g28180
OsAffx.14859.1.S1_x_at--681--9891NONE
TACTATCTTGGCCAGGCACACTGGA
NONE
OsAffx.14859.1.S1_x_at--162--7291Chr05:16400185..16400209 (25 bp)
GTGCCTCACATCAGGGTTCAGTTTA
LOC_Os05g28180
OsAffx.14859.1.S1_x_at--727--331Chr05:16399784..16399808 (25 bp)
ATACACATCGTGTCCGGGTTCCAAG
LOC_Os05g28180
Target Sequence 
AACATTTTCCTTCCTCTGTTTGAGGTCACCATTGATCCAGCTTCTCATCCGCAGCTTCACGTCTTCCTAAAGCAGGTTGT
AGGGTTAGATTTGGTTGATGATGAGAGTAAACCTGAAAGGCGTCCAACAAAGCATATGCCTACACCTGAACAATGGACCA
ATGTCTTCAACCCAGCATTTTCATATTATGCATATTACTGCTATGCTAACTTATACACACTCAATAAGGCTGGAGACATC
GATCACTTGGCAGCAACATTTCTTCTTTGTCACAATATATCGCATGGAATCAACTTAAGGAAATCTCCTGTGCTTCAATA
TCTATACTATCTTGGCCAGGCACACTGGATTGGCAAGAACTATTACAAAAGAGGACCTACAGGGAACGATATTCATAAAA
CTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTGTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTG
TCCGGGTTCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14859.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis