Browse Element(s) Details


OsAffx.14862.1.S1_x_at

Description tigr:9633.m02609
TID=OsAffx.14862.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glutaredoxin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2853011/11Glutaredoxin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28510Os.3381.1.S1_a_at11/115+16615815..16620585Importin-beta N-terminal domain containing protein, expressed
LOC_Os05g28520Os.27154.1.S1_at11/115+16621099..16623986ser-thr protein kinase, putative, expressed
LOC_Os05g28530OsAffx.14862.1.S1_x_at11/115+16636776..16637522Glutaredoxin family protein
LOC_Os05g28540Os.20627.3.S1_x_at1/115+16639174..16643475retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28540OsAffx.1646.1.S1_x_at1/115+16639174..16643475retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28550OsAffx.22722.1.S1_at2/115+16643769..16646105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28550OsAffx.22722.1.S1_x_at1/115+16643769..16646105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28560OsAffx.10496.1.S1_at1/115+16646996..16649855retrotransposon protein, putative, unclassified
LOC_Os05g28570OsAffx.14863.1.S1_at11/115+16651440..16652916hypothetical protein
LOC_Os05g28580OsAffx.14864.1.S1_at8/115+16654193..16654894hypothetical protein
LOC_Os05g28590OsAffx.14865.1.S1_at9/115+16658126..16660665retrotransposon protein, putative, unclassified
LOC_Os05g28590OsAffx.22240.1.S1_x_at1/115+16658126..16660665retrotransposon protein, putative, unclassified
LOC_Os05g28590OsAffx.8338.1.S1_x_at1/115+16658126..16660665retrotransposon protein, putative, unclassified
LOC_Os05g28590OsAffx.20733.1.S1_x_at1/115+16658126..16660665retrotransposon protein, putative, unclassified
LOC_Os05g28590OsAffx.9790.1.S1_x_at1/115+16658126..16660665retrotransposon protein, putative, unclassified
LOC_Os05g28600NANA5+16661467..16663891transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14862.1.S1_x_at--297--8171Chr05:16637299..16637323 (25 bp)
GGAACGTCCTGCACCGCGTGAGGTC
LOC_Os05g28530
OsAffx.14862.1.S1_x_at--111--7251Chr05:16637294..16637318 (25 bp)
GTCCTGCACCGCGTGAGGTCGTCGA
LOC_Os05g28530
OsAffx.14862.1.S1_x_at--865--3831Chr05:16637291..16637315 (25 bp)
CTGCACCGCGTGAGGTCGTCGACCA
LOC_Os05g28530
OsAffx.14862.1.S1_x_at--743--2631Chr05:16637267..16637291 (25 bp)
AAGCTCCGGGCGTGCAAGTCGTTCG
LOC_Os05g28530
OsAffx.14862.1.S1_x_at--152--1591Chr05:16637266..16637290 (25 bp)
AGCTCCGGGCGTGCAAGTCGTTCGC
LOC_Os05g28530
OsAffx.14862.1.S1_x_at--48--9291Chr05:16637263..16637287 (25 bp)
TCCGGGCGTGCAAGTCGTTCGCCGT
LOC_Os05g28530
OsAffx.14862.1.S1_x_at--1124--4071Chr05:16637205..16637229 (25 bp)
CGAGCGGCGCGTGGTGCTCTACTTC
LOC_Os05g28530
OsAffx.14862.1.S1_x_at--227--4491Chr05:16637168..16637192 (25 bp)
GCCGTGCGAGGCACGTTCGAGGACT
LOC_Os05g28530
OsAffx.14862.1.S1_x_at--526--1891Chr05:16637156..16637180 (25 bp)
ACGTTCGAGGACTGCCGCGACGTGC
LOC_Os05g28530
OsAffx.14862.1.S1_x_at--950--1691Chr05:16636853..16636877 (25 bp)
AGCCACCGGCGGTACAGCGAGAAGA
LOC_Os05g28530
OsAffx.14862.1.S1_x_at--572--7031Chr05:16636842..16636866 (25 bp)
GTACAGCGAGAAGACCGGCGGCTTC
LOC_Os05g28530
Target Sequence 
GGAACGTCCTGCACCGCGTGAGGTCGTCGACCAAGCTCCGGGCGTGCAAGTCGTTCGCCGTCGCGGCGGAGGCGGCCGCC
GCGGCGGTGGCGGGCGAGCGGCGCGTGGTGCTCTACTTCACCTCCCTCCGCGCCGTGCGAGGCACGTTCGAGGACTGCCG
CGACGTGCGCGCCATCCTGCGGGGGCTCCGCGTCGCCGTCGACGAGCGGGACGTGTCCATGGACGCCGCCTACCTCGCCG
AGCTCCGCGCGCTCATGCGCCGGGACCGGCCGGCGCTGCCGCAGCTGTTCGTCGGGGGCCGCCTCGTGGGCGACGCCGAC
GAGGTGCGCCTCCTCCACGAGAGCGGGGAGCTCCACCGCGTGGTGGCCGGCGCGGCGCGGGCGGCGGCCACGCCGTGCGC
GTCGTGCGGCGGGACGCGGTTCGTGCCCTGCGGCACGTGCGACGGCAGCCACCGGCGGTACAGCGAGAAGACCGGCGGCT
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14862.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis