Browse Element(s) Details


OsAffx.14912.1.S1_at

Description tigr:9633.m02941
TID=OsAffx.14912.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3210011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32070NANA5+18610675..18612009lateral root primordium 1, putative, expressed
LOC_Os05g32080Os.47130.4.A1_x_at1/115+18616803..18617129retrotransposon protein, putative, unclassified
LOC_Os05g32090NANA5+18627495..18628100hypothetical protein
LOC_Os05g32100OsAffx.14912.1.S1_at11/115+18630764..18631459hypothetical protein
LOC_Os05g32110Os.7609.1.S1_at11/115+18638164..18641670COBRA-like protein 2 precursor, putative, expressed
LOC_Os05g32110Os.14437.2.S1_x_at1/115+18638164..18641670COBRA-like protein 2 precursor, putative, expressed
LOC_Os05g32120Os.5214.1.S1_at1/115+18645724..18648191expressed protein
LOC_Os05g32130Os.5214.1.S2_at6/115+18649280..18651484hypothetical protein
LOC_Os05g32140Os.16894.1.S1_at11/115+18655503..18658815UDP-sulfoquinovose synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14912.1.S1_at--702--751Chr05:18630923..18630947 (25 bp)
ATGTACGAGCTGTTCACCGAGGAGC
LOC_Os05g32100
OsAffx.14912.1.S1_at--210--9951Chr05:18630926..18630950 (25 bp)
TACGAGCTGTTCACCGAGGAGCAGG
LOC_Os05g32100
OsAffx.14912.1.S1_at--941--4211Chr05:18631158..18631182 (25 bp)
CCGCTGGTTGTTCGAGCCGTGAAAC
LOC_Os05g32100
OsAffx.14912.1.S1_at--682--6711Chr05:18631167..18631191 (25 bp)
GTTCGAGCCGTGAAACGCCGGCGAA
LOC_Os05g32100
OsAffx.14912.1.S1_at--948--2591Chr05:18631180..18631204 (25 bp)
AACGCCGGCGAAAACGCAGGTCTCG
LOC_Os05g32100
OsAffx.14912.1.S1_at--50--4111Chr05:18631188..18631212 (25 bp)
CGAAAACGCAGGTCTCGCCGGCGGC
LOC_Os05g32100
OsAffx.14912.1.S1_at--599--1531Chr05:18631311..18631335 (25 bp)
AGCAGGTCTGCTGCGTGCGGTCCAC
LOC_Os05g32100
OsAffx.14912.1.S1_at--230--9131Chr05:18631326..18631350 (25 bp)
TGCGGTCCACTACTCCGGTGCGAGA
LOC_Os05g32100
OsAffx.14912.1.S1_at--1038--9891Chr05:18631336..18631360 (25 bp)
TACTCCGGTGCGAGACCCGGTGCTG
LOC_Os05g32100
OsAffx.14912.1.S1_at--47--4511Chr05:18631361..18631385 (25 bp)
GCCGAGTTCTTGGACGGCGTCGTCA
LOC_Os05g32100
OsAffx.14912.1.S1_at--152--4651Chr05:18631377..18631401 (25 bp)
GCGTCGTCAGCAAGTCGCCCGGCGA
LOC_Os05g32100
Target Sequence 
ATGTACGAGCTGTTCACCGAGGAGCAGGACGAGTGGTACGACCCGCTCGACGCGGCCGCGCTCCGCGCCAGGTTCCGCGC
GCCGTCCACGCCTCTCGACGACGCCCGCTGCCGCGACCTCCGCCCCGGCGACCCGCTCTGCGTCGCCTGCGCCCTCGCCG
GCGGCGTCGAGCTCAAGTTCTTCGACGCCGTCCTCGAATCCGTACGTACCGCACCGGCCCTCCTCCTCCTCCCTCCCGCT
GGTTGTTCGAGCCGTGAAACGCCGGCGAAAACGCAGGTCTCGCCGGCGGCGCACGAGACGGTGGACGGCGAGGAGCGGTG
CGCGTGCCGTTTCTCGGTGCGGTGGGCGGAGGGGCCGCTCGCCGGGGCCATGGCGGAGGTCGGCGTCGAGCAGGTCTGCT
GCGTGCGGTCCACTACTCCGGTGCGAGACCCGGTGCTGGCCGAGTTCTTGGACGGCGTCGTCAGCAAGTCGCCCGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis