Browse Element(s) Details


Os.5214.1.S1_at

Description gb:AK071425.1
DB_XREF= gi:32981448
TID=Os.5214.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5214 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033047G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023096B08, full insert sequence.
FL= gb:AK071425.1 gb:AK059319.1 gb:AK073634.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g321201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32090NANA5+18627495..18628100hypothetical protein
LOC_Os05g32100OsAffx.14912.1.S1_at11/115+18630764..18631459hypothetical protein
LOC_Os05g32110Os.7609.1.S1_at11/115+18638164..18641670COBRA-like protein 2 precursor, putative, expressed
LOC_Os05g32110Os.14437.2.S1_x_at1/115+18638164..18641670COBRA-like protein 2 precursor, putative, expressed
LOC_Os05g32120Os.5214.1.S1_at1/115+18645724..18648191expressed protein
LOC_Os05g32130Os.5214.1.S2_at6/115+18649280..18651484hypothetical protein
LOC_Os05g32140Os.16894.1.S1_at11/115+18655503..18658815UDP-sulfoquinovose synthase, chloroplast precursor, putative, expressed
LOC_Os05g32150Os.50911.1.S1_at8/115+18659708..18660345expressed protein
LOC_Os05g32160OsAffx.14913.1.S1_at11/115+18666833..18667144hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5214.1.S1_at--307--2371Chr05:18648120..18648144 (25 bp)
AAACGGTTTCGTGATCATGGGCTAT
LOC_Os05g32120
Os.5214.1.S1_at--842--1611Chr05:18648195..18648219 (25 bp)
AGCTGGCAAAGCTACACCACATCTG
NONE
Os.5214.1.S1_at--869--2091Chr05:18648213..18648237 (25 bp)
ACATCTGTCCTTGCAACAGCATCAA
NONE
Os.5214.1.S1_at--217--4971Chr05:18648231..18648255 (25 bp)
GCATCAAACTTTTGCAGCTGGTGTT
NONE
Os.5214.1.S1_at--639--8171Chr05:18648273..18648297 (25 bp)
GGAACCGTGGGATTGATTTGCCATC
NONE
Os.5214.1.S1_at--1040--9731Chr05:18648340..18648364 (25 bp)
TAATTGTACATCAAGCCCCTTTCAG
NONE
Os.5214.1.S1_at--308--10331Chr05:18648359..18648383 (25 bp)
TTTCAGAGCGACCTGTTGTCATGAT
NONE
Os.5214.1.S1_at--421--7551Chr05:18648463..18648487 (25 bp)
GTGGCCACAAATATTAGCGAGTCAA
NONE
Os.5214.1.S1_at--156--10211Chr05:18648570..18648594 (25 bp)
TATTATTCTTTTTACCTCCTTTCAT
NONE
Os.5214.1.S1_at--630--9811Chr05:18648604..18648628 (25 bp)
TAACTGTCATGTGTGATGGCCTGCT
NONE
Os.5214.1.S1_at--843--871Chr05:18648619..18648643 (25 bp)
ATGGCCTGCTGGGTGTCCACAAAAC
NONE
Target Sequence 
AAACGGTTTCGTGATCATGGGCTATGGCTTGTCGATGAACATAGTGATGAGTCACCACTTGGTAGAATATGAGCAAGCTG
GCAAAGCTACACCACATCTGTCCTTGCAACAGCATCAAACTTTTGCAGCTGGTGTTTAACTGGTTGGGATTGCGGAACCG
TGGGATTGATTTGCCATCCGCCACACAAAAATACAGCAACTGGATATGTGCAGTAGTTTTTAATTGTACATCAAGCCCCT
TTCAGAGCGACCTGTTGTCATGATGATTATTTTTATTTCATTATCTTTTACGAATACGGCAGCAGTAAGATCTTAGGGTG
AGAATGTAGCTATTTAAGGGAATGTGGCCACAAATATTAGCGAGTCAAGTAGTAACTCATTGGTCTATATGTATAGCATG
GTAATTTTGTTAACCTGTAGGCATTTTTTTTGACACTGGATTGTGTTTAATATTATTCTTTTTACCTCCTTTCATAAAGA
ACTCTAACTGTCATGTGTGATGGCCTGCTGGGTGTCCACAAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis