Browse Element(s) Details


Os.7609.1.S1_at

Description gb:AK070472.1
DB_XREF= gi:32980496
TID=Os.7609.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7609 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054D22, full insert sequence.
FL= gb:AK062748.1 gb:AK070472.1 gb:AK060897.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3211011/11COBRA-like protein 2 precursor, putative, expressed
LOC_Os05g442101/11Alpha,alpha-trehalose-phosphate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32080Os.47130.4.A1_x_at1/115+18616803..18617129retrotransposon protein, putative, unclassified
LOC_Os05g32090NANA5+18627495..18628100hypothetical protein
LOC_Os05g32100OsAffx.14912.1.S1_at11/115+18630764..18631459hypothetical protein
LOC_Os05g32110Os.7609.1.S1_at11/115+18638164..18641670COBRA-like protein 2 precursor, putative, expressed
LOC_Os05g32110Os.14437.2.S1_x_at1/115+18638164..18641670COBRA-like protein 2 precursor, putative, expressed
LOC_Os05g32120Os.5214.1.S1_at1/115+18645724..18648191expressed protein
LOC_Os05g32130Os.5214.1.S2_at6/115+18649280..18651484hypothetical protein
LOC_Os05g32140Os.16894.1.S1_at11/115+18655503..18658815UDP-sulfoquinovose synthase, chloroplast precursor, putative, expressed
LOC_Os05g32150Os.50911.1.S1_at8/115+18659708..18660345expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005991biological_processtrehalose metabolism
GO:0005992biological_processtrehalose biosynthesis
GO:0009790biological_processembryonic development
GO:0009825biological_processmultidimensional cell growth
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0010182biological_processsugar mediated signaling
GO:0010215biological_processcellulose microfibril organization
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0009897cellular_componentexternal side of plasma membrane
GO:0009930cellular_componentlongitudinal side of cell surface (sensu Magnoliophyta)
GO:0031225cellular_componentanchored to membrane
GO:0046658cellular_componentanchored to plasma membrane
GO:0003825molecular_functionalpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0004805molecular_functiontrehalose-phosphatase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7609.1.S1_at--189--1011Chr05:18638734..18638758 (25 bp)
AGGATTCCAAGGACTTCACCTTTGA
LOC_Os05g32110
Os.7609.1.S1_at--456--71Chr05:18638731..18638755 (25 bp)
ATTCCAAGGACTTCACCTTTGACAA
LOC_Os05g32110
Os.7609.1.S1_at--619--9311Chr05:18638695..18638719 (25 bp)
TCCCACACCGCGTGTACTTCAATGG
LOC_Os05g32110
Os.7609.1.S1_at--807--3491Chr05:18638635..18638659 (25 bp)
CATGGTTGCCTAATGCAAGTCCTCT
LOC_Os05g32110
Os.7609.1.S1_at--618--10691Chr05:18638630..18638654 (25 bp)
TTGCCTAATGCAAGTCCTCTGACAA
LOC_Os05g32110
Os.7609.1.S1_at--467--2851Chr05:18638619..18638643 (25 bp)
AAGTCCTCTGACAAAACAACCATTG
LOC_Os05g32110
Os.7609.1.S1_at--731--2211Chr05:18638604..18638628 (25 bp)
ACAACCATTGACACTCTCGGTTTTG
LOC_Os05g32110
Os.7609.1.S1_at--970--5611Chr05:18638595..18638619 (25 bp)
GACACTCTCGGTTTTGGTATTTTCG
LOC_Os05g32110
Os.7609.1.S1_at--794--5531Chr05:18638532..18638556 (25 bp)
GAAACCAAGAAATTCGGTGAGCTTC
LOC_Os05g32110
Os.7609.1.S1_at--204--2251Chr05:18638523..18638547 (25 bp)
AAATTCGGTGAGCTTCAAGTTGTCA
LOC_Os05g32110
Os.7609.1.S1_at--67--6052Chr05:25634059..25634360 (25 bp)
GAGATCATTTAGTTTTGTTTCTTGT
LOC_Os05g44210
Target Sequence 
AGGATTCCAAGGACTTCACCTTTGACAAGGGATGGGCCTTCCCACACCGCGTGTACTTCAATGGTGATAATTGTGTCATG
CCACCTCCGGATGCATATCCATGGTTGCCTAATGCAAGTCCTCTGACAAAACAACCATTGACACTCTCGGTTTTGGTATT
TTCGATTGTGTTGGCTACTTTGCTGGCTTATGCATGATGAGTGAAACCAAGAAATTCGGTGAGCTTCAAGTTGTCAGGTT
CCATGGTGTGCACTGCAACAGATCATTTGTTCATTCAGTTCCACGGTTGCATAGAAGAGAAGATGTCACGCTGAGGAAAG
CTGATATGTGTGTGTGTGTTGTATGTTAAAAGAAGGCCAAAATGTATTTCTTTTTTGGTATATATACTGGCCACAGCATT
TTGGTGAACTTAGTTACTGCAAACTAGATAATTACAGTTGCACCTTTTGTATGTTATAGCAACCAGAAATTCAATTGAAT
TATATGACTTCCCTTCTTGTAGTACATGTATAGACTCCGTAATAATGTTCTGTATGATTTTGTGAACAGAAAGGATGCTG
TTGATTGAGATCATTTAGTTTTGTTTCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis