Browse Element(s) Details


Os.16894.1.S1_at

Description gb:AK060744.1
DB_XREF= gi:32970762
TID=Os.16894.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16894 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-035-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-032-E09, full insert sequence.
FL= gb:AK065310.1 gb:AK060744.1 gb:AK061359.1 gb:AK104679.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3214011/11UDP-sulfoquinovose synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32100OsAffx.14912.1.S1_at11/115+18630764..18631459hypothetical protein
LOC_Os05g32110Os.7609.1.S1_at11/115+18638164..18641670COBRA-like protein 2 precursor, putative, expressed
LOC_Os05g32110Os.14437.2.S1_x_at1/115+18638164..18641670COBRA-like protein 2 precursor, putative, expressed
LOC_Os05g32120Os.5214.1.S1_at1/115+18645724..18648191expressed protein
LOC_Os05g32130Os.5214.1.S2_at6/115+18649280..18651484hypothetical protein
LOC_Os05g32140Os.16894.1.S1_at11/115+18655503..18658815UDP-sulfoquinovose synthase, chloroplast precursor, putative, expressed
LOC_Os05g32150Os.50911.1.S1_at8/115+18659708..18660345expressed protein
LOC_Os05g32160OsAffx.14913.1.S1_at11/115+18666833..18667144hypothetical protein
LOC_Os05g32170Os.24008.1.S2_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32170Os.24008.1.S1_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32180Os.49440.1.S1_x_at11/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32180Os.49440.1.S1_at10/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009247biological_processglycolipid biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0046506biological_processsulfolipid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0008146molecular_functionsulfotransferase activity
GO:0046507molecular_functionUDPsulfoquinovose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16894.1.S1_at--552--9331Chr05:18658269..18658293 (25 bp)
TCGCCGTCCAGTACAAGGACAGGGT
LOC_Os05g32140
Os.16894.1.S1_at--151--1951Chr05:18658298..18658322 (25 bp)
ACGGCGCAGATCATGCCCAGCGTGT
LOC_Os05g32140
Os.16894.1.S1_at--55--4211Chr05:18658359..18658383 (25 bp)
CCGTCTAAGAGGAGGCTGGTTTTGC
LOC_Os05g32140
Os.16894.1.S1_at--1069--6911Chr05:18658483..18658507 (25 bp)
GTGTGGTTACGGTGTTAGATTTCTT
LOC_Os05g32140
Os.16894.1.S1_at--830--6731Chr05:18658512..18658536 (25 bp)
GTTCTTCCTCACGAATAGATGCTGC
LOC_Os05g32140
Os.16894.1.S1_at--1059--10031Chr05:18658527..18658551 (25 bp)
TAGATGCTGCAATCTGATCGAAGGG
LOC_Os05g32140
Os.16894.1.S1_at--258--10811Chr05:18658571..18658595 (25 bp)
TTGTAAACTTTTATCCAGCTCTTGA
LOC_Os05g32140
Os.16894.1.S1_at--898--3391Chr05:18658586..18658610 (25 bp)
CAGCTCTTGATCAGCAAATGGGTAT
LOC_Os05g32140
Os.16894.1.S1_at--731--8891Chr05:18658649..18658673 (25 bp)
TGAGTGTTTCCGAACTGAAGATGGT
LOC_Os05g32140
Os.16894.1.S1_at--604--3251Chr05:18658753..18658777 (25 bp)
CAACTGACAGTTCTACCATAGGAAT
LOC_Os05g32140
Os.16894.1.S1_at--971--5591Chr05:18658790..18658814 (25 bp)
GAAATTCACATCTGATTGGATACTG
LOC_Os05g32140
Target Sequence 
TCGCCGTCCAGTACAAGGACAGGGTCGACACGGCGCAGATCATGCCCAGCGTGTCGTGGAAGAAGATGGGGGCGAAGCCG
AAGACGGTGTCCGTCTAAGAGGAGGCTGGTTTTGCCATGGCGGGGTATAATGTCAACCGTGACATTGACATTATAAATTT
GGTGTGTAGTAATGCAATAATTATGTGCGTTTAGTATAATGCACGTTGTAGTGGGTGTGGTTACGGTGTTAGATTTCTTT
TTTGTTCTTCCTCACGAATAGATGCTGCAATCTGATCGAAGGGGATTCNTTCTGTATTTCTGTTGTAAACTTTTATCCAG
CTCTTGATCAGCAAATGGGTATCCAGGATGCAGGGGGGTATTTGAGCCTTTTTTTTTTTTTTTTGAGTGTTTCCGAACTG
AAGATGGTGTAATAATACCATACATACCACTAATTTCTTTTATTGTTAATTGAACTTATAAAATAGTAATATCGCGAAAA
CATTTTCCAACTGACAGTTCTACCATAGGAATAAAGCGGTGGTAGAAATTCACATCTGATTGGATACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis