Browse Element(s) Details


Os.24008.1.S2_at

Description gb:AK120230.1
DB_XREF= gi:37989853
TID=Os.24008.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043D20, full insert sequence.
FL= gb:AK105254.1 gb:AK120230.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3217011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32130Os.5214.1.S2_at6/115+18649280..18651484hypothetical protein
LOC_Os05g32140Os.16894.1.S1_at11/115+18655503..18658815UDP-sulfoquinovose synthase, chloroplast precursor, putative, expressed
LOC_Os05g32150Os.50911.1.S1_at8/115+18659708..18660345expressed protein
LOC_Os05g32160OsAffx.14913.1.S1_at11/115+18666833..18667144hypothetical protein
LOC_Os05g32170Os.24008.1.S2_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32170Os.24008.1.S1_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32180Os.49440.1.S1_x_at11/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32180Os.49440.1.S1_at10/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32190Os.17748.1.S1_at11/115+18685899..18688970expressed protein
LOC_Os05g32200OsAffx.27116.1.S1_at11/115+18690921..18691766hypothetical protein
LOC_Os05g32210OsAffx.27117.1.S1_s_at11/115+18696550..18703299ATP-NAD kinase family protein, expressed
LOC_Os05g32210OsAffx.27117.1.S1_at9/115+18696550..18703299ATP-NAD kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005886cellular_componentplasma membrane
GO:0009986cellular_componentcell surface
GO:0030139cellular_componentendocytic vesicle
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24008.1.S2_at--538--8151Chr05:18676543..18676567 (25 bp)
GGAAATCACTTACCAGCAACCTGGC
LOC_Os05g32170
Os.24008.1.S2_at--940--2611Chr05:18676560..18676584 (25 bp)
AACCTGGCCATCCATTTCGGAAATC
LOC_Os05g32170
Os.24008.1.S2_at--328--7851Chr05:18676585..18676609 (25 bp)
GGTACTGTGCTGGTAATGTCATCAA
LOC_Os05g32170
Os.24008.1.S2_at--1097--4891Chr05:18676611..18676635 (25 bp)
GCTTAAGTCCTAAGGTCTCCGGTGA
LOC_Os05g32170
Os.24008.1.S2_at--38--1031Chr05:18676623..18676647 (25 bp)
AGGTCTCCGGTGATAACCAATGCAA
LOC_Os05g32170
Os.24008.1.S2_at--38--3291Chr05:18676650..18676674 (25 bp)
CAAACTGTGGTTAATCCTCTGTAAG
LOC_Os05g32170
Os.24008.1.S2_at--763--7111Chr05:18676708..18676732 (25 bp)
GTCTGAGCAGCAAGGCACGGTTGAT
LOC_Os05g32170
Os.24008.1.S2_at--378--3051Chr05:18676800..18676824 (25 bp)
AATCGAGCAGCAAGGCACGGTTGAT
LOC_Os05g32170
Os.24008.1.S2_at--868--9491Chr05:18676872..18676896 (25 bp)
TCTCCATGTAAGCAACCGGTAATCA
LOC_Os05g32170
Os.24008.1.S2_at--1003--1771Chr05:18676886..18676910 (25 bp)
ACCGGTAATCATTTTGCTGCTTCAG
LOC_Os05g32170
Os.24008.1.S2_at--152--6971Chr05:18676958..18676982 (25 bp)
GTAGCTTTTGCCCAACTTCTTTGAT
LOC_Os05g32170
Target Sequence 
GGAAATCACTTACCAGCAACCTGGCCATCCATTTCGGAAATCGGTACTGTGCTGGTAATGTCATCAAGGCTTAAGTCCTA
AGGTCTCCGGTGATAACCAATGCAACACAAACTGTGGTTAATCCTCTGTAAGATTGACTGGATCAGGAAGGCTGGAAGGC
TGGAAGTCTGAGCAGCAAGGCACGGTTGATCAACAATACCTATTGTTGAGCATTTGAGATTTGTTAATGAAATTCATTCT
CCATGTNAGCAACCGNTAATCGAGCAGCAAGGCACGGTTGATCAACAATACCTATTGTTGAGCATTTGAGATTTGTTAAT
GAAATTCATTCTCCATGTAAGCAACCGGTAATCATTTTGCTGCTTCAGTTCAAGTTTGGAGCTTTAAAATGATCNCTAGN
TGGAAGTAGATTGTTGTAGCTTTTGCCCAACTTCTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24008.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis