Browse Element(s) Details


Os.17748.1.S1_at

Description gb:AK062285.1
DB_XREF= gi:32972303
TID=Os.17748.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.17748 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D04, full insert sequence.
FL= gb:AK062285.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3219011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32160OsAffx.14913.1.S1_at11/115+18666833..18667144hypothetical protein
LOC_Os05g32170Os.24008.1.S2_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32170Os.24008.1.S1_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32180Os.49440.1.S1_x_at11/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32180Os.49440.1.S1_at10/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32190Os.17748.1.S1_at11/115+18685899..18688970expressed protein
LOC_Os05g32200OsAffx.27116.1.S1_at11/115+18690921..18691766hypothetical protein
LOC_Os05g32210OsAffx.27117.1.S1_s_at11/115+18696550..18703299ATP-NAD kinase family protein, expressed
LOC_Os05g32210OsAffx.27117.1.S1_at9/115+18696550..18703299ATP-NAD kinase family protein, expressed
LOC_Os05g32220Os.12053.1.S1_at11/115+18706496..1871063050S ribosomal protein L1, putative, expressed
LOC_Os05g32230Os.7439.1.S1_at11/115+18713295..18718949expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17748.1.S1_at--817--10771Chr05:18687134..18687158 (25 bp)
TTGTTTGGGATTTGGACTCCAGCCT
LOC_Os05g32190
Os.17748.1.S1_at--484--10631Chr05:18687105..18687129 (25 bp)
TTCCCATGTTCATTCATCCAGTACG
LOC_Os05g32190
Os.17748.1.S1_at--482--571Chr05:18687090..18687114 (25 bp)
ATCCAGTACGTTTCTGATGCCATAC
LOC_Os05g32190
Os.17748.1.S1_at--518--6351Chr05:18687075..18687099 (25 bp)
GATGCCATACGACCATTATCATTTG
LOC_Os05g32190
Os.17748.1.S1_at--81--911Chr05:18686615..18686639 (25 bp)
AGGCTTTTCCGTGTGATTCATGCTC
LOC_Os05g32190
Os.17748.1.S1_at--233--131Chr05:18686600..18686624 (25 bp)
ATTCATGCTCCTGTATTTCTTCGAT
LOC_Os05g32190
Os.17748.1.S1_at--354--6931Chr05:18686118..18686142 (25 bp)
GTATGGCTGATGATGTCTACTCCAG
LOC_Os05g32190
Os.17748.1.S1_at--1038--7151Chr05:18686104..18686128 (25 bp)
GTCTACTCCAGCAAACATGGTGTGG
LOC_Os05g32190
Os.17748.1.S1_at--1019--8071Chr05:18686022..18686046 (25 bp)
GGAGCTATCTATCCCGATTCATGAA
LOC_Os05g32190
Os.17748.1.S1_at--595--6051Chr05:18685979..18686003 (25 bp)
GAGATTTATGAACCAAGTCCAGAGT
LOC_Os05g32190
Os.17748.1.S1_at--413--2191Chr05:18685915..18685939 (25 bp)
ACACAGTTTTGCTTGCTGAGTAAAT
LOC_Os05g32190
Target Sequence 
TTGTTTGGGATTTGGACTCCAGCCTTCCTTTCCCATGTTCATTCATCCAGTACGTTTCTGATGCCATACGACCATTATCA
TTTGGCAACTCTACCTANAGGAGGCTTTTCCGTGTGATTCATGCTCCTGTATTTCTTCGATCATTTGCATNTGATAGAAG
CCACATGAAGGATCATGCAGGGAATTGGATTCAGTTGCCCCCAAAGTATGAATCAATTGTTGCAGAAGATGGAACCACCA
ATAATNTGAATGAGTACATTACGATGTCTATGGATGATGTGAAGGACCTGGAAAGTATGGCTGATGATGTCTACTCCAGC
AAACATGGTGTGGTGATAAATGAAACTATNNNGNCTGAATTCTTCTCTCGCTTGNCCTGGANTGACTCAACAGGAGCTAT
CTATCCCGATTCATGAAGCTATTNTTGTTGTCCNATGAGATTTATGAACCAAGTCCAGAGTTANAAATGATGTTGTCCAA
GCAATTGTTAACACAATGTTTACACAGTTTTGCTTGCTGAGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis