Browse Element(s) Details


OsAffx.27117.1.S1_s_at

Description tigr:9633.m02952
TID=OsAffx.27117.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATP-NAD kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3221011/11ATP-NAD kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32170Os.24008.1.S2_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32170Os.24008.1.S1_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32180Os.49440.1.S1_x_at11/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32180Os.49440.1.S1_at10/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32190Os.17748.1.S1_at11/115+18685899..18688970expressed protein
LOC_Os05g32200OsAffx.27116.1.S1_at11/115+18690921..18691766hypothetical protein
LOC_Os05g32210OsAffx.27117.1.S1_s_at11/115+18696550..18703299ATP-NAD kinase family protein, expressed
LOC_Os05g32210OsAffx.27117.1.S1_at9/115+18696550..18703299ATP-NAD kinase family protein, expressed
LOC_Os05g32220Os.12053.1.S1_at11/115+18706496..1871063050S ribosomal protein L1, putative, expressed
LOC_Os05g32230Os.7439.1.S1_at11/115+18713295..18718949expressed protein
LOC_Os05g32240NANA5+18719305..18719631hypothetical protein
LOC_Os05g32250OsAffx.6425.1.S1_at1/115+18721123..18724096hypothetical protein
LOC_Os05g32260NANA5+18725711..18725992hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019363biological_processpyridine nucleotide biosynthesis
GO:0003951molecular_functionNAD+ kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27117.1.S1_s_at--530--7451Chr05:18702271..18702295 (25 bp)
GTGTCATGTAATCTACGATTCAGCT
LOC_Os05g32210
OsAffx.27117.1.S1_s_at--645--8011Chr05:18702313..18702337 (25 bp)
GGAGGAGCCAATTCTAGTGCTGAAT
LOC_Os05g32210
OsAffx.27117.1.S1_s_at--949--6111Chr05:18702338..18702362 (25 bp)
GAGGTTACAATTGACCGTGGGATGT
LOC_Os05g32210
OsAffx.27117.1.S1_s_at--333--5831Chr05:18702350..18702374 (25 bp)
GACCGTGGGATGTCATCGTACCTTA
LOC_Os05g32210
OsAffx.27117.1.S1_s_at--87--7131Chr05:18702361..18702385 (25 bp)
GTCATCGTACCTTACCTACTTAGAA
LOC_Os05g32210
OsAffx.27117.1.S1_s_at--41--5271Chr05:18702383..18702407 (25 bp)
GAATGCTATTGTGACAGTTCTTTTG
LOC_Os05g32210
OsAffx.27117.1.S1_s_at--694--2131Chr05:18702396..18702420 (25 bp)
ACAGTTCTTTTGTCACACGTGTTCA
LOC_Os05g32210
OsAffx.27117.1.S1_s_at--950--5671Chr05:18703068..18703092 (25 bp)
GACATTGCGTGTGCAAGTGCCAATC
LOC_Os05g32210
OsAffx.27117.1.S1_s_at--411--1571Chr05:18703142..18703166 (25 bp)
AGCTAGGGCCAGGTGATGCACTCAT
LOC_Os05g32210
OsAffx.27117.1.S1_s_at--107--9191Chr05:18703201..18703225 (25 bp)
TGCCTGGTGGACTCAACAACTGACT
LOC_Os05g32210
OsAffx.27117.1.S1_s_at--970--9131Chr05:18703229..18703253 (25 bp)
TGCGAAGCATCCATGAGGGCCTCCA
LOC_Os05g32210
Target Sequence 
GTGTCATGTAATCTACGATTCAGCTAAAAATGAAGTTGATACGGAGGAGCCAATTCTAGTGCTGAATGAGGTTACAATTG
ACCGTGGGATGTCATCGTACCTTACCTACTTAGAATGCTATTGTGACAGTTCTTTTGTCACACGTGTTCAAGGAGATGGG
TTAATAATATCAACAACATCTGGAAGCACAGCTTATTCATTGGCAGCTGGGGGATCGATGGTTCATCCACAGGTCCCAGG
GATCCTTTTCACGCCAATCTGTCCCCATTCATTATCATTCAGGCCTTTGATACTACCTGAATATGTGACATTGCGTGTGC
AAGTGCCAATCAATAGCAGAGGGCAGGCATGGGCATCCTTCGACGGCAAGGGCAGGAAGCAGCTAGGGCCAGGTGATGCA
CTCATCTGCAGCATTTCTCCATGGCCTGTGCCCACTGCCTGCCTGGTGGACTCAACAACTGACTTCCTGCGAAGCATCCA
TGAGGGCCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27117.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis