Browse Element(s) Details


Os.24008.1.S1_at

Description gb:AK105254.1
DB_XREF= gi:32990463
TID=Os.24008.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-D09, full insert sequence.
FL= gb:AK105254.1 gb:AK120230.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3217011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32130Os.5214.1.S2_at6/115+18649280..18651484hypothetical protein
LOC_Os05g32140Os.16894.1.S1_at11/115+18655503..18658815UDP-sulfoquinovose synthase, chloroplast precursor, putative, expressed
LOC_Os05g32150Os.50911.1.S1_at8/115+18659708..18660345expressed protein
LOC_Os05g32160OsAffx.14913.1.S1_at11/115+18666833..18667144hypothetical protein
LOC_Os05g32170Os.24008.1.S2_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32170Os.24008.1.S1_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32180Os.49440.1.S1_x_at11/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32180Os.49440.1.S1_at10/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32190Os.17748.1.S1_at11/115+18685899..18688970expressed protein
LOC_Os05g32200OsAffx.27116.1.S1_at11/115+18690921..18691766hypothetical protein
LOC_Os05g32210OsAffx.27117.1.S1_s_at11/115+18696550..18703299ATP-NAD kinase family protein, expressed
LOC_Os05g32210OsAffx.27117.1.S1_at9/115+18696550..18703299ATP-NAD kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005886cellular_componentplasma membrane
GO:0009986cellular_componentcell surface
GO:0030139cellular_componentendocytic vesicle
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24008.1.S1_at--167--3872Chr05:18675913..18675937 (25 bp)
CTGATATCTTTTCAAGTTTGGATGC
LOC_Os05g32170
Os.24008.1.S1_at--794--6191Chr05:18675975..18675999 (25 bp)
GAGGCAGGAAAAATCAAGCATGAAT
LOC_Os05g32170
Os.24008.1.S1_at--238--1471Chr05:18676105..18676129 (25 bp)
AGAAGGCAGGGAAAACCAAGCATGA
LOC_Os05g32170
Os.24008.1.S1_at--950--5291Chr05:18676151..18676175 (25 bp)
GAAGGCAGTGGGAATCAATCTTGAA
LOC_Os05g32170
Os.24008.1.S1_at--1130--351Chr05:18676164..18676188 (25 bp)
ATCAATCTTGAAGCAGGGAAGGAGC
LOC_Os05g32170
Os.24008.1.S1_at--764--5651Chr05:18676280..18676304 (25 bp)
GACAGGGCAAAATCCTGGCATAGAA
LOC_Os05g32170
Os.24008.1.S1_at--927--5511Chr05:18676307..18676331 (25 bp)
GAAAATCCAAGACACGGCAGAGAAG
LOC_Os05g32170
Os.24008.1.S1_at--458--1351Chr05:18676337..18676361 (25 bp)
AGAGCATGATGCTAGGGTAGTCCAA
LOC_Os05g32170
Os.24008.1.S1_at--521--8851Chr05:18676343..18676367 (25 bp)
TGATGCTAGGGTAGTCCAAGACAAA
LOC_Os05g32170
Os.24008.1.S1_at--618--5791Chr05:18676383..18676407 (25 bp)
GACGAAGCCAAGAAAATCCAATGAG
LOC_Os05g32170
Os.24008.1.S1_at--529--3011Chr05:18676424..18676448 (25 bp)
AATGCAACTGTTCTTAATCAATTAT
LOC_Os05g32170
Target Sequence 
CTGATATCTTTTCAAGTTTGGATGCNAAAATCAAGCNTGAATTGGNGNAAGAGCAGCAAGAGGAGGCAGGAAAAATCAAG
CATGAATTGGTGAAAGAGCAGCAAGAGAAGGCAGGAAATATCAAGCAGGAATTGGTGAAAGAGCAGCAAGAGAAGGCAGG
AAATATCAAGCAGGAATCAGGGGAAGAGCAAGAGAAGGCAGGGAAAACCAAGCATGATGCAGGGAAAGGGCATGTTGAGA
AGGCAGTGGGAATCAATCTTGAAGCAGGGAAGGAGCAGGAGAAAGTAGAGAAAAACCAAGAGAAAGAAATGAAAATCCAA
GAAAAACTTGGGGAAATCTTTGATAAAGCAATGAAATCTGAAGAAAAGACAGGGCAAAATCCTGGCATAGAAAAGAAAAT
CCAAGACACGGCAGAGAAGAAACAAGAGCATGATGCTAGGGTAGTCCAAGACAAAGTGGAGAAGATCCAAGACGAAGCCA
AGAAAATCCAATGAGTGTAAAGAGTTAAAATAATGCAACTGTTCTTAATCAATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis