Browse Element(s) Details


Os.50911.1.S1_at

Description gb:AK059416.1
DB_XREF= gi:32969434
TID=Os.50911.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50911 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D06, full insert sequence.
FL= gb:AK059416.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g321508/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32110Os.7609.1.S1_at11/115+18638164..18641670COBRA-like protein 2 precursor, putative, expressed
LOC_Os05g32110Os.14437.2.S1_x_at1/115+18638164..18641670COBRA-like protein 2 precursor, putative, expressed
LOC_Os05g32120Os.5214.1.S1_at1/115+18645724..18648191expressed protein
LOC_Os05g32130Os.5214.1.S2_at6/115+18649280..18651484hypothetical protein
LOC_Os05g32140Os.16894.1.S1_at11/115+18655503..18658815UDP-sulfoquinovose synthase, chloroplast precursor, putative, expressed
LOC_Os05g32150Os.50911.1.S1_at8/115+18659708..18660345expressed protein
LOC_Os05g32160OsAffx.14913.1.S1_at11/115+18666833..18667144hypothetical protein
LOC_Os05g32170Os.24008.1.S2_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32170Os.24008.1.S1_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32180Os.49440.1.S1_x_at11/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32180Os.49440.1.S1_at10/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50911.1.S1_at--787--7231Chr05:18660019..18660043 (25 bp)
GTCGCGGCAGCTGTGAAATCTTGAT
LOC_Os05g32150
Os.50911.1.S1_at--658--491NONE
ATCGGCTGTTCGATCGAGTGCCCGG
NONE
Os.50911.1.S1_at--992--591Chr05:18659925..18659949 (25 bp)
ATGCCTGAGGCCGTCAGATCGAGAT
LOC_Os05g32150
Os.50911.1.S1_at--51--10351Chr05:18659895..18659919 (25 bp)
TTTAGCCTCTGTTAATTGTCTCGCG
LOC_Os05g32150
Os.50911.1.S1_at--334--9491NONE
TCTCGCGCATTGACCTGGCAGGAAG
NONE
Os.50911.1.S1_at--727--5591Chr05:18659832..18659856 (25 bp)
GAAATTAGGTAGCTCTGATCAACGA
LOC_Os05g32150
Os.50911.1.S1_at--604--6451Chr05:18659816..18659840 (25 bp)
GATCAACGAGATCATTCCATTTTGG
LOC_Os05g32150
Os.50911.1.S1_at--347--6091Chr05:18659792..18659816 (25 bp)
GAGTAATTTATCCATGGTCCCGTTC
LOC_Os05g32150
Os.50911.1.S1_at--1044--791Chr05:18659779..18659803 (25 bp)
ATGGTCCCGTTCTTAATTCCGTGCT
LOC_Os05g32150
Os.50911.1.S1_at--1095--9111Chr05:18659744..18659768 (25 bp)
TGCTGTATTTCGATTTACGCATGAA
LOC_Os05g32150
Os.50911.1.S1_at--525--1411Chr05:18659708..18659732 (25 bp)
AGAAATAGAATGTTACCGACCCCTG
NONE
Target Sequence 
GTCGCGGCAGCTGTGAAATCTTGATCGGCTGTTCGATCGAGTGCCCGGCCGCCGGAACGTCGATTTGCGAGAGGCGAATC
GCGGCGAGACGACGATGCCTGAGGCCGTCAGATCGAGATGGAAATTTAGCCTCTGTTAATTGTCTCGCGCATTGACCTGG
CAGGAAGGCAGGTCAAGAACATGTACAGAAATTAGGTAGCTCTGATCAACGAGATCATTCCATTTTGGAGTAATTTATCC
ATGGTCCCGTTCTTAATTCCGTGCTCTGCACTTGTTGCTGTATTTCGATTTACGCATGAAAAACTTTGGGTAGAAATAGA
ATGTTACCGACCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis