Browse Element(s) Details


Os.5214.1.S2_at

Description gb:AK073634.1
DB_XREF= gi:32983657
TID=Os.5214.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5214 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033047G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033047G07, full insert sequence.
FL= gb:AK071425.1 gb:AK059319.1 gb:AK073634.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g321306/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32090NANA5+18627495..18628100hypothetical protein
LOC_Os05g32100OsAffx.14912.1.S1_at11/115+18630764..18631459hypothetical protein
LOC_Os05g32110Os.7609.1.S1_at11/115+18638164..18641670COBRA-like protein 2 precursor, putative, expressed
LOC_Os05g32110Os.14437.2.S1_x_at1/115+18638164..18641670COBRA-like protein 2 precursor, putative, expressed
LOC_Os05g32120Os.5214.1.S1_at1/115+18645724..18648191expressed protein
LOC_Os05g32130Os.5214.1.S2_at6/115+18649280..18651484hypothetical protein
LOC_Os05g32140Os.16894.1.S1_at11/115+18655503..18658815UDP-sulfoquinovose synthase, chloroplast precursor, putative, expressed
LOC_Os05g32150Os.50911.1.S1_at8/115+18659708..18660345expressed protein
LOC_Os05g32160OsAffx.14913.1.S1_at11/115+18666833..18667144hypothetical protein
LOC_Os05g32170Os.24008.1.S2_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32170Os.24008.1.S1_at11/115+18674175..18677085Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5214.1.S2_at--960--51Chr05:18650080..18650104 (25 bp)
ATTGCAGTACAGGATACCGGAAAAA
LOC_Os05g32130
Os.5214.1.S2_at--609--3951Chr05:18650097..18650121 (25 bp)
CGGAAAAAGCGGAACTTCAGAAGCA
LOC_Os05g32130
Os.5214.1.S2_at--1150--2511Chr05:18650109..18650128 (20 bp)
AACTTCAGAAGCAGTACGAGAGGGT
LOC_Os05g32130
Os.5214.1.S2_at--380--2711NONE
AAGCAGTACGAGAGGGTGAACAAGA
NONE
Os.5214.1.S2_at--238--2631Chr05:18651254..18651278 (25 bp)
AACCTGAGCAGGAAGCAGTTCATGG
LOC_Os05g32130
Os.5214.1.S2_at--90--3471Chr05:18651290..18651314 (25 bp)
CAGGTGATCAAGGTGAACAGCTTCA
LOC_Os05g32130
Os.5214.1.S2_at--678--9311Chr05:18651378..18651402 (25 bp)
TCGCCAAGAGGGTCGTCCCGGGCCT
LOC_Os05g32130
Os.5214.1.S2_at--631--4391Chr05:18651464..18651488 (25 bp)
GCCAAGACCAACAAGCTGTGATCGA
NONE
Os.5214.1.S2_at--871--4371Chr05:18651471..18651495 (25 bp)
CCAACAAGCTGTGATCGAGGTGAAT
NONE
Os.5214.1.S2_at--371--4071Chr05:18651486..18651510 (25 bp)
CGAGGTGAATCGATCGTTCCAGAAT
NONE
Os.5214.1.S2_at--124--7131Chr05:18651577..18651601 (25 bp)
GTCATGTCGTATAAAGTTTGCGTTG
NONE
Target Sequence 
ATTGCAGTACAGGATACCGGAAAAAGCGGAACTTCAGAAGCAGTACGAGAGGGTGAACAAGAGCCCCCAGAAGGGGCAGA
ACCTGAGCAGGAAGCAGTTCATGGAGCTGGCCGGGCAGGTGATCAAGGTGAACAGCTTCACCTTCGGCAAGGCCACCATG
GACGTGCTGGTCGTCCTCTTCGGCGCCCCCGTCTGCGCCCTCCTCGCCAAGAGGGTCGTCCCGGGCCTCAAGTCCTTCTC
CGACGACGTCGTCATCCCCGTCGCCACCTCCGGCGCCGTCGTCTACCTCGCCAAGACCAACAAGCTGTGATCGAGGTGAA
TCGATCGTTCCAGAATCATATCCAGACTATGGCTAACAAATTATCGCGAGAATAAAGGTGAGGGAGAAAAAACGTACGTG
GTGTCATGTCGTATAAAGTTTGCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5214.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis