Browse Element(s) Details


OsAffx.14913.1.S1_at

Description tigr:9633.m02947
TID=OsAffx.14913.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3216011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32120Os.5214.1.S1_at1/115+18645724..18648191expressed protein
LOC_Os05g32130Os.5214.1.S2_at6/115+18649280..18651484hypothetical protein
LOC_Os05g32140Os.16894.1.S1_at11/115+18655503..18658815UDP-sulfoquinovose synthase, chloroplast precursor, putative, expressed
LOC_Os05g32150Os.50911.1.S1_at8/115+18659708..18660345expressed protein
LOC_Os05g32160OsAffx.14913.1.S1_at11/115+18666833..18667144hypothetical protein
LOC_Os05g32170Os.24008.1.S2_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32170Os.24008.1.S1_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32180Os.49440.1.S1_x_at11/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32180Os.49440.1.S1_at10/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32190Os.17748.1.S1_at11/115+18685899..18688970expressed protein
LOC_Os05g32200OsAffx.27116.1.S1_at11/115+18690921..18691766hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14913.1.S1_at--728--4731Chr05:18666863..18666887 (25 bp)
GCTTTCGTTACGAGCTCGTTTCCTT
LOC_Os05g32160
OsAffx.14913.1.S1_at--184--9951Chr05:18666871..18666895 (25 bp)
TACGAGCTCGTTTCCTTGGGCCTTG
LOC_Os05g32160
OsAffx.14913.1.S1_at--1106--10831Chr05:18666886..18666910 (25 bp)
TTGGGCCTTGGCTCTGGTGACTTTC
LOC_Os05g32160
OsAffx.14913.1.S1_at--1003--10851Chr05:18666893..18666917 (25 bp)
TTGGCTCTGGTGACTTTCCTGGACA
LOC_Os05g32160
OsAffx.14913.1.S1_at--268--7771Chr05:18666901..18666925 (25 bp)
GGTGACTTTCCTGGACATATGGATC
LOC_Os05g32160
OsAffx.14913.1.S1_at--1065--9271Chr05:18666909..18666933 (25 bp)
TCCTGGACATATGGATCGGGCTGGT
LOC_Os05g32160
OsAffx.14913.1.S1_at--76--8631Chr05:18666930..18666954 (25 bp)
TGGTGTGGACGGACGCGGACGCAGA
LOC_Os05g32160
OsAffx.14913.1.S1_at--200--5111Chr05:18666993..18667017 (25 bp)
GCACGGCAGAGGGACAGCCACGATT
LOC_Os05g32160
OsAffx.14913.1.S1_at--866--6131Chr05:18667001..18667025 (25 bp)
GAGGGACAGCCACGATTGCACGTAA
LOC_Os05g32160
OsAffx.14913.1.S1_at--193--1691Chr05:18667008..18667032 (25 bp)
AGCCACGATTGCACGTAAAGGCAGT
LOC_Os05g32160
OsAffx.14913.1.S1_at--343--611Chr05:18667086..18667110 (25 bp)
ATGCGGCTCGTAAGTCGCGGAGGAA
LOC_Os05g32160
Target Sequence 
GCTTTCGTTACGAGCTCGTTTCCTTGGGCCTTGGCTCTGGTGACTTTCCTGGACATATGGATCGGGCTGGTGTGGACGGA
CGCGGACGCAGACGCAGACGCAGACGCAGGCAAGAGGCGTTGCAGGGGCAGCACGGCAGAGGGACAGCCACGATTGCACG
TAAAGGCAGTGGGGACGAGAAGACGGCAACAGCAGCAGCAGCAGCAGCCGCCCCCGCCAGCCGATGCGGCTCGTAAGTCG
CGGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis