Browse Element(s) Details


Os.49440.1.S1_at

Description gb:AK101626.1
DB_XREF= gi:32986835
TID=Os.49440.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033052M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052M16, full insert sequence.
FL= gb:AK101626.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3218010/11GCN5-related N-acetyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32140Os.16894.1.S1_at11/115+18655503..18658815UDP-sulfoquinovose synthase, chloroplast precursor, putative, expressed
LOC_Os05g32150Os.50911.1.S1_at8/115+18659708..18660345expressed protein
LOC_Os05g32160OsAffx.14913.1.S1_at11/115+18666833..18667144hypothetical protein
LOC_Os05g32170Os.24008.1.S2_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32170Os.24008.1.S1_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32180Os.49440.1.S1_x_at11/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32180Os.49440.1.S1_at10/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32190Os.17748.1.S1_at11/115+18685899..18688970expressed protein
LOC_Os05g32200OsAffx.27116.1.S1_at11/115+18690921..18691766hypothetical protein
LOC_Os05g32210OsAffx.27117.1.S1_s_at11/115+18696550..18703299ATP-NAD kinase family protein, expressed
LOC_Os05g32210OsAffx.27117.1.S1_at9/115+18696550..18703299ATP-NAD kinase family protein, expressed
LOC_Os05g32220Os.12053.1.S1_at11/115+18706496..1871063050S ribosomal protein L1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49440.1.S1_at--465--6051Chr05:18681662..18681686 (25 bp)
GAGTTACAGATGGAGTCTTCTGCCC
LOC_Os05g32180
Os.49440.1.S1_at--673--6771Chr05:18681660..18681684 (25 bp)
GTTACAGATGGAGTCTTCTGCCCAG
LOC_Os05g32180
Os.49440.1.S1_at--701--9851Chr05:18681658..18681682 (25 bp)
TACAGATGGAGTCTTCTGCCCAGGG
LOC_Os05g32180
Os.49440.1.S1_at--161--831Chr05:18681611..18681635 (25 bp)
ATGGAGTTGGTCGAACTTATAGCCT
LOC_Os05g32180
Os.49440.1.S1_at--1153--1231Chr05:18681607..18681631 (25 bp)
AGTTGGTCGAACTTATAGCCTGTAA
LOC_Os05g32180
Os.49440.1.S1_at--429--7211Chr05:18681606..18681626 (21 bp)
GTCGAACTTATAGCCTGTAAGAGCC
LOC_Os05g32180
Os.49440.1.S1_at--602--4371Chr05:18681363..18681387 (25 bp)
CCAAATGGGAGCAGTAATGTTAACA
LOC_Os05g32180
Os.49440.1.S1_at--508--8071Chr05:18681356..18681380 (25 bp)
GGAGCAGTAATGTTAACAGTTCAGA
LOC_Os05g32180
Os.49440.1.S1_at--477--10731Chr05:18680515..18680539 (25 bp)
TTGCAAAACGCAATTGTACACTGTT
LOC_Os05g32180
Os.49440.1.S1_at--288--2431Chr05:18680511..18680535 (25 bp)
AAAACGCAATTGTACACTGTTCTTG
LOC_Os05g32180
Os.49440.1.S1_at--915--2591Chr05:18680509..18680533 (25 bp)
AACGCAATTGTACACTGTTCTTGCC
NONE
Target Sequence 
GAGTTACAGATGGAGTCTTCTGCCCAGGGGAAGGGGCTGGGAAAATTTCTAATGGAGTTGGTCGAACTTATAGCCTGTAA
GAGCCAAATGGGAGCAGTAATGTTAACAGTTCAGAAAGCTAATAACCTTGCTATGGCTTTCTACAAGAAGTTGAGATATG
TAATATCCNAGTACTTCGCCATCGCNAGTAGATCCATTGATTGGACTTGAAAAAAANCTATGAGATTTTATGCAAGGCAT
TTGAATCTGAAGCNAAGTCCATATTAGAGGAAGGCAACTGNAAAACTCCCAGCGCAATGACCAATCNTTGNTACAATGNG
ATGTGATGATGGNATGTTGNTCTTCACTACAGTATTGACACCNTTACCGGGTNCNAGNGCTNCAGCTNACGCNTTGNGCG
GNATATCGNTCAGGNCCNNCGNGNTTACTGNNATGNCNTACAGANTGNCNCCGNTTTTTGTCTGAANGAANCNTGTTCCN
NNNNNNNCATTCTGGGAAACAAACACGATTGGCTGGCCCATATTCTTTCCTTGCAAAACGCAATTGTACACTGTTCTTGC
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis