Browse Element(s) Details


OsAffx.27117.1.S1_at

Description tigr:9633.m02952
TID=OsAffx.27117.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATP-NAD kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g322109/11ATP-NAD kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32170Os.24008.1.S2_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32170Os.24008.1.S1_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32180Os.49440.1.S1_x_at11/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32180Os.49440.1.S1_at10/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32190Os.17748.1.S1_at11/115+18685899..18688970expressed protein
LOC_Os05g32200OsAffx.27116.1.S1_at11/115+18690921..18691766hypothetical protein
LOC_Os05g32210OsAffx.27117.1.S1_s_at11/115+18696550..18703299ATP-NAD kinase family protein, expressed
LOC_Os05g32210OsAffx.27117.1.S1_at9/115+18696550..18703299ATP-NAD kinase family protein, expressed
LOC_Os05g32220Os.12053.1.S1_at11/115+18706496..1871063050S ribosomal protein L1, putative, expressed
LOC_Os05g32230Os.7439.1.S1_at11/115+18713295..18718949expressed protein
LOC_Os05g32240NANA5+18719305..18719631hypothetical protein
LOC_Os05g32250OsAffx.6425.1.S1_at1/115+18721123..18724096hypothetical protein
LOC_Os05g32260NANA5+18725711..18725992hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019363biological_processpyridine nucleotide biosynthesis
GO:0003951molecular_functionNAD+ kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27117.1.S1_at--666--5371Chr05:18700567..18700591 (25 bp)
GAAGACATTACACACGAAGGTTGAT
LOC_Os05g32210
OsAffx.27117.1.S1_at--133--5671Chr05:18700570..18700594 (25 bp)
GACATTACACACGAAGGTTGATCTC
LOC_Os05g32210
OsAffx.27117.1.S1_at--996--131Chr05:18700573..18700597 (25 bp)
ATTACACACGAAGGTTGATCTCATT
LOC_Os05g32210
OsAffx.27117.1.S1_at--151--9811Chr05:18700599..18700623 (25 bp)
TAACTCTTGGAGGTGATGGAACAGT
LOC_Os05g32210
OsAffx.27117.1.S1_at--733--3751Chr05:18700602..18700626 (25 bp)
CTCTTGGAGGTGATGGAACAGTTTT
LOC_Os05g32210
OsAffx.27117.1.S1_at--497--7391Chr05:18700611..18700904 (25 bp)
GTGATGGAACAGTTTTATGGTGTCA
LOC_Os05g32210
OsAffx.27117.1.S1_at--960--8151NONE
GGAACAGTTTTATGGTGTCATGTAA
NONE
OsAffx.27117.1.S1_at--149--3451NONE
CAGTTTTATGGTGTCATGTAATCTA
NONE
OsAffx.27117.1.S1_at--816--7231Chr05:18702994..18703018 (25 bp)
GTCCCAGGGATCCTTTTCACGCCAA
LOC_Os05g32210
OsAffx.27117.1.S1_at--339--4211Chr05:18703024..18703048 (25 bp)
CCCCATTCATTATCATTCAGGCCTT
LOC_Os05g32210
OsAffx.27117.1.S1_at--659--4311Chr05:18703026..18703050 (25 bp)
CCATTCATTATCATTCAGGCCTTTG
LOC_Os05g32210
Target Sequence 
GAAGACATTACACACGAAGGTTGATCTCATTGTAACTCTTGGAGGTGATGGAACAGTTTTATGGTGTCATGTAATCTACG
ATTCAGCTAAAAATGAAGTTGATACGGAGGAGCCAATTCTAGTGCTGAATGAGGTTACAATTGACCGTGGGATGTCATCG
TACCTTACCTACTTAGAATGCTATTGTGACAGTTCTTTTGTCACACGTGTTCAAGGAGATGGGTTAATAATATCAACAAC
ATCTGGAAGCACAGCTTATTCATTGGCAGCTGGGGGATCGATGGTTCATCCACAGGTCCCAGGGATCCTTTTCACGCCAA
TCTGTCCCCATTCATTATCATTCAGGCCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis