Browse Element(s) Details


Os.7439.1.S1_at

Description gb:AK105904.1
DB_XREF= gi:32991113
TID=Os.7439.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7439 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F12, full insert sequence.
FL= gb:AK105904.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3223011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32190Os.17748.1.S1_at11/115+18685899..18688970expressed protein
LOC_Os05g32200OsAffx.27116.1.S1_at11/115+18690921..18691766hypothetical protein
LOC_Os05g32210OsAffx.27117.1.S1_s_at11/115+18696550..18703299ATP-NAD kinase family protein, expressed
LOC_Os05g32210OsAffx.27117.1.S1_at9/115+18696550..18703299ATP-NAD kinase family protein, expressed
LOC_Os05g32220Os.12053.1.S1_at11/115+18706496..1871063050S ribosomal protein L1, putative, expressed
LOC_Os05g32230Os.7439.1.S1_at11/115+18713295..18718949expressed protein
LOC_Os05g32240NANA5+18719305..18719631hypothetical protein
LOC_Os05g32250OsAffx.6425.1.S1_at1/115+18721123..18724096hypothetical protein
LOC_Os05g32260NANA5+18725711..18725992hypothetical protein
LOC_Os05g32270Os.49193.1.S1_at11/115+18730328..18734550AP2 domain transcription factor, putative, expressed
LOC_Os05g32280OsAffx.828.1.S1_x_at1/115+18736757..18737946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g32290OsAffx.9949.1.S1_at1/115+18739991..18745654retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7439.1.S1_at--279--9051Chr05:18718514..18718538 (25 bp)
TGCAGACTCTGAACACTTACGACTC
LOC_Os05g32230
Os.7439.1.S1_at--1119--4071Chr05:18718533..18718557 (25 bp)
CGACTCCCGTTTGGCGCAAGAAAAT
LOC_Os05g32230
Os.7439.1.S1_at--304--6811Chr05:18718573..18718597 (25 bp)
GTTTTTATGGAACTGAAGCCCGAAG
LOC_Os05g32230
Os.7439.1.S1_at--270--7871Chr05:18718651..18718675 (25 bp)
GGTTTGTGCGTTCTGTTTTGTTGAA
LOC_Os05g32230
Os.7439.1.S1_at--929--7131Chr05:18718705..18718729 (25 bp)
GTCATTTATTTGGTGCGCACGTTCT
LOC_Os05g32230
Os.7439.1.S1_at--471--3351Chr05:18718722..18718746 (25 bp)
CACGTTCTTGTGTTTGGGACCATTG
LOC_Os05g32230
Os.7439.1.S1_at--1077--8091Chr05:18718738..18718762 (25 bp)
GGACCATTGCATTCTTTGTTTCGTA
LOC_Os05g32230
Os.7439.1.S1_at--843--6211Chr05:18718774..18718798 (25 bp)
GAGGCCTCTCGTGTTAAAAAGACCT
LOC_Os05g32230
Os.7439.1.S1_at--926--2331Chr05:18718791..18718815 (25 bp)
AAAGACCTTCAGTATGATCCTGCAG
LOC_Os05g32230
Os.7439.1.S1_at--684--6371Chr05:18718806..18718830 (25 bp)
GATCCTGCAGGCATGAGGTCAATTT
LOC_Os05g32230
Os.7439.1.S1_at--612--7831Chr05:18718822..18718846 (25 bp)
GGTCAATTTTATAAGCAGCTGGCAA
LOC_Os05g32230
Target Sequence 
TGCAGACTCTGAACACTTACGACTCCCGTTTGGCGCAAGAAAATCTAGGACAGATTTCGGTTTTTATGGAACTGAAGCCC
GAAGGAAAAGGGTAATTTGTCGAATNCCCATGAACAAGTGATTGGATTGTTAGTNGGTGGTTTGTGCGTTCTGTTTTGTT
GAATTGGATNCCTTTGAAGCAATAATTTTGCCGTCATTTATTTGGTGCGCACGTTCTTGTGTTTGGGACCATTGCATTCT
TTGTTTCGTAACGCACAAGAAGAGGCCTCTCGTGTTAAAAAGACCTTCAGTATGATCCTGCAGGCATGAGGTCAATTTTA
TAAGCAGCTGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis