Browse Element(s) Details


OsAffx.27116.1.S1_at

Description tigr:9633.m02951
TID=OsAffx.27116.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3220011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32160OsAffx.14913.1.S1_at11/115+18666833..18667144hypothetical protein
LOC_Os05g32170Os.24008.1.S2_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32170Os.24008.1.S1_at11/115+18674175..18677085Protein kinase domain containing protein, expressed
LOC_Os05g32180Os.49440.1.S1_x_at11/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32180Os.49440.1.S1_at10/115+18680509..18684040GCN5-related N-acetyltransferase, putative, expressed
LOC_Os05g32190Os.17748.1.S1_at11/115+18685899..18688970expressed protein
LOC_Os05g32200OsAffx.27116.1.S1_at11/115+18690921..18691766hypothetical protein
LOC_Os05g32210OsAffx.27117.1.S1_s_at11/115+18696550..18703299ATP-NAD kinase family protein, expressed
LOC_Os05g32210OsAffx.27117.1.S1_at9/115+18696550..18703299ATP-NAD kinase family protein, expressed
LOC_Os05g32220Os.12053.1.S1_at11/115+18706496..1871063050S ribosomal protein L1, putative, expressed
LOC_Os05g32230Os.7439.1.S1_at11/115+18713295..18718949expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27116.1.S1_at--535--6312Chr11:12338859..12338881 (23 bp)
GATGACCGTCGAGCACGAAGCAGCG
NONE
OsAffx.27116.1.S1_at--546--1851Chr05:18691180..18691204 (25 bp)
ACGAAGCAGCGCATGCCGTAGCCCT
LOC_Os05g32200
OsAffx.27116.1.S1_at--532--4571Chr05:18691280..18691304 (25 bp)
GCGCAGAGGTCGTGGTCCGTCCACC
LOC_Os05g32200
OsAffx.27116.1.S1_at--867--9051Chr05:18691355..18691379 (25 bp)
TGCAGGCACAGAACACACACGATTT
LOC_Os05g32200
OsAffx.27116.1.S1_at--735--2191Chr05:18691367..18691391 (25 bp)
ACACACACGATTTCAACAACAGGAG
LOC_Os05g32200
OsAffx.27116.1.S1_at--1147--7713Chr11:12339199..12339223 (25 bp)
GGTGGGTTTCCCCTGAAGCCGCTCT
NONE
OsAffx.27116.1.S1_at--282--4611Chr05:18691558..18691582 (25 bp)
GCGACGGCAAGCAGCTAGCTCAAGA
LOC_Os05g32200
OsAffx.27116.1.S1_at--316--4832Chr11:12339243..12339263 (21 bp)
GCTCAAGACCAGTATGATCTCATCG
NONE
OsAffx.27116.1.S1_at--306--6451Chr05:18691609..18691633 (25 bp)
GATCACGAGCTCTCATAAGGAATCG
LOC_Os05g32200
OsAffx.27116.1.S1_at--422--6852Chr11:12339298..12339322 (25 bp)
GTTTGGGTCGTTTGTGCCGTGCCAA
NONE
OsAffx.27116.1.S1_at--225--2952Chr11:12339358..12339382 (25 bp)
AAGGCCGGGCGCAATGGCTTCCGCA
NONE
Target Sequence 
GATGACCGTCGAGCACGAAGCAGCGCATGCCGTAGCCCTCCTGCGGGCAGTGCCCGAGCTCCCGGAGCGCGTCCACGTGT
CCCAGCGACGCCGCGCGCGCACAGCGCTGCCCCCGCGCAGAGGTCGTGGTCCGTCCACCGCGCCCTTCCGCTTCCTCCCT
CCACCGCCGCTGTCGCCGCCACGGCACCCTGCAGGCACAGAACACACACGATTTCAACAACAGGAGAAGGGGAAGGAAAC
GGAGATAGGGAGAGAGATAGGGCGGCGAGAGGAGGCGGCGCCACGGCCGACGCGGGGTGGGAAGATGGCGCGCCCTCGCG
CTCCGCCCTCAGTGGCGGCGGGTGAGGAGAAGGGTGGTTCGTTTAGGTGGGTTTCCCCTGAAGCCGCTCTTGGCGACGGC
AAGCAGCTAGCTCAAGACCAGTATGATCTCATCGATCTCTCAAGATCACGAGCTCTCATAAGGAATCGAGTGTGTTTGGG
TCGTTTGTGCCGTGCCAAGCGGGAGTGTAGGGATGCAGGGCACAACGACGACCAAGGCCGGGCGCAATGGCTTCCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis