Browse Element(s) Details


OsAffx.14962.1.S1_at

Description tigr:9633.m03216
TID=OsAffx.14962.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3469011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34660OsAffx.14961.1.S1_at10/115+20481717..20482306hypothetical protein
LOC_Os05g34670Os.18517.1.S1_at11/115+20485736..20490481KH domain-containing quaking protein, putative, expressed
LOC_Os05g34680OsAffx.4518.1.S1_s_at11/115+20497882..20499899expressed protein
LOC_Os05g34680Os.48343.1.A1_at6/115+20497882..20499899expressed protein
LOC_Os05g34690OsAffx.14962.1.S1_at11/115+20500837..20502255hypothetical protein
LOC_Os05g34700Os.18450.1.S1_s_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.18450.1.S1_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.51561.1.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.28229.2.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34710Os.51244.1.S1_at11/115+20508160..20508951expressed protein
LOC_Os05g34720Os.27206.1.S1_at10/115+20512490..20515635Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os05g34730OsAffx.27165.1.S1_at11/115+20518075..20518668AP2 domain containing protein, expressed
LOC_Os05g34740NANA5+20522157..20522465hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14962.1.S1_at--494--711Chr05:20501453..20501477 (25 bp)
ATGATGGCCCTGTGACCGCTACAAG
LOC_Os05g34690
OsAffx.14962.1.S1_at--651--7371Chr05:20501442..20501466 (25 bp)
GTGACCGCTACAAGTACTCTCAACT
LOC_Os05g34690
OsAffx.14962.1.S1_at--1017--5991Chr05:20501400..20501424 (25 bp)
GAGAGCTTGTGGAAAGGCCAACGAC
LOC_Os05g34690
OsAffx.14962.1.S1_at--200--2291Chr05:20501388..20501412 (25 bp)
AAAGGCCAACGACGATGGAACGTGA
LOC_Os05g34690
OsAffx.14962.1.S1_at--1088--5451Chr05:20501371..20501395 (25 bp)
GAACGTGATTGCATGGGCCGCTTCA
LOC_Os05g34690
OsAffx.14962.1.S1_at--80--2511Chr05:20501338..20501362 (25 bp)
AACTTCAACAGAACGACACCCGGAG
LOC_Os05g34690
OsAffx.14962.1.S1_at--160--1711Chr05:20500951..20501317 (25 bp)
ACCAATATCCATCCCTGGAGGAGCA
LOC_Os05g34690
OsAffx.14962.1.S1_at--840--6171Chr05:20500934..20500958 (25 bp)
GAGGAGCAAGGCAGTACCCCATGTG
LOC_Os05g34690
OsAffx.14962.1.S1_at--42--1191Chr05:20500922..20500946 (25 bp)
AGTACCCCATGTGGCAGCCGATGAA
LOC_Os05g34690
OsAffx.14962.1.S1_at--144--2671Chr05:20500899..20500923 (25 bp)
AAGCCTGTGGCTCCCATGACGAGGA
LOC_Os05g34690
OsAffx.14962.1.S1_at--1026--6151Chr05:20500879..20500903 (25 bp)
GAGGACGGAGATCCCTCACCCGTTG
LOC_Os05g34690
Target Sequence 
ATGATGGCCCTGTGACCGCTACAAGTACTCTCAACTCCGTCGCCGCGAGGAGAGAGAGCTTGTGGAAAGGCCAACGACGA
TGGAACGTGATTGCATGGGCCGCTTCATCTCCTTCAACTTCAACAGAACGACACCCGGAGAACCCCACTGCCTTGTCACC
ACCAATATCCATCCCTGGAGGAGCAAGGCAGTACCCCATGTGGCAGCCGATGAAGCCTGTGGCTCCCATGACGAGGACGG
AGATCCCTCACCCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis