Browse Element(s) Details


OsAffx.15014.1.S1_s_at

Description tigr:9633.m03593
TID=OsAffx.15014.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3868011/11uncharacterized plant-specific domain TIGR01589 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38640Os.9745.1.S1_at11/115+22573654..22574824Histone H2A, putative, expressed
LOC_Os05g38650OsAffx.15012.1.S1_x_at11/115+22578592..22579023hypothetical protein
LOC_Os05g38660Os.55283.1.S1_at11/115+22582154..22582816expressed protein
LOC_Os05g38670OsAffx.15013.1.S1_at11/115+22587742..22591452cation efflux family protein
LOC_Os05g38680OsAffx.15014.1.S1_s_at11/115+22594830..22596061uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g38680Os.28394.2.S1_s_at11/115+22594830..22596061uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g38690OsAffx.27228.1.S1_at11/115+22615360..22616469expressed protein
LOC_Os05g38700OsAffx.27229.1.S1_at11/115+22618262..22619611hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15014.1.S1_s_at--1072--5951Chr05:22595684..22595708 (25 bp)
GAGAAGTGCATTTGCTTCAACCTGA
LOC_Os05g38680
OsAffx.15014.1.S1_s_at--325--8071Chr05:22595634..22595658 (25 bp)
GGAGAAGCATGCCAACATCAACCCT
LOC_Os05g38680
OsAffx.15014.1.S1_s_at--491--2611Chr05:22595618..22595639 (22 bp)
AACCCTGTCGTCACTTCCACAGTAT
LOC_Os05g38680
OsAffx.15014.1.S1_s_at--658--2191Chr05:22595266..22595290 (25 bp)
ACAACAAGGACAGGGCGGAGCGCAA
LOC_Os05g38680
OsAffx.15014.1.S1_s_at--297--5071Chr05:22595223..22595247 (25 bp)
GCAGCGGATCCAGAAGATGCTCTCC
LOC_Os05g38680
OsAffx.15014.1.S1_s_at--560--4092Chr04:32633446..32633906 (25 bp)
CGACGACGAGAGCTAGCTCTAGCTA
NONE
OsAffx.15014.1.S1_s_at--290--6071Chr05:22595121..22595145 (25 bp)
GAGTTCATGACTAGCTCTTCACATG
LOC_Os05g38680
OsAffx.15014.1.S1_s_at--1016--10511Chr05:22595104..22595128 (25 bp)
TTCACATGAGCTCTCTAGCTAGCTA
LOC_Os05g38680
OsAffx.15014.1.S1_s_at--143--1571Chr05:22595084..22595108 (25 bp)
AGCTAGCTTGCTTGTTTGATTTGGC
LOC_Os05g38680
OsAffx.15014.1.S1_s_at--53--10791Chr05:22595069..22595093 (25 bp)
TTGATTTGGCTCCATCCCATTGAGA
LOC_Os05g38680
OsAffx.15014.1.S1_s_at--320--6011Chr05:22595048..22595072 (25 bp)
GAGAGCTCTTTTTCAATCCTCGTAT
LOC_Os05g38680
Target Sequence 
GAGAAGTGCATTTGCTTCAACCTGAACAAGGAGGAGTGCATGGAGGCCCTGGAGAAGCATGCCAACATCAACCCTGTCGT
CACTTCCACAGTATGGAAGGAGCTGGAGAAGGAGAACAAGGAGTTCTTCGAGACCTACAACAAGGACAGGGCGGAGCGCA
ACATCGAGGCGGAGACGATGCAGCGGATCCAGAAGATGCTCTCCGACGCCGCGGCATCCAAGGGCTCCGACGACGACGAC
GACGACGAGAGCTAGCTCTAGCTAAGCTATAGCTATAGCTAGAGTTCATGACTAGCTCTTCACATGAGCTCTCTAGCTAG
CTAGCTTGCTTGTTTGATTTGGCTCCATCCCATTGAGAGCTCTTTTTCAATCCTCGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15014.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis