Browse Element(s) Details


OsAffx.15029.1.S1_at

Description tigr:9633.m03691
TID=OsAffx.15029.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3964011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39590Os.54212.1.S1_at11/115+23164500..23166848AP2 domain containing protein, expressed
LOC_Os05g39600Os.53362.1.S1_at11/115+23167929..23171197Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g39600Os.53362.2.S1_at6/115+23167929..23171197Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g39610Os.10500.1.S1_at11/115+23171743..23174288Exo70 exocyst complex subunit family protein, expressed
LOC_Os05g39620OsAffx.21171.3.S1_x_at4/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_x_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.4.S1_x_at2/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.22711.4.S1_at1/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39630OsAffx.29284.1.S1_x_at1/115+23187528..23188130hypothetical protein
LOC_Os05g39640OsAffx.15029.1.S1_at11/115+23189008..23189486hypothetical protein
LOC_Os05g39650Os.27499.2.S1_a_at11/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_s_at4/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_x_at1/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39660OsAffx.4562.1.S1_at10/115+23199922..23201170hypothetical protein
LOC_Os05g39670Os.6752.1.S1_at9/115+23201427..23202535PRA1 family protein, expressed
LOC_Os05g39680OsAffx.27242.1.S1_x_at10/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39680Os.23700.1.A1_at6/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39690Os.9824.1.S2_at6/115+23214329..23217004Aldose reductase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15029.1.S1_at--491--1691Chr05:23189083..23189107 (25 bp)
AGCCATGGGAAGGACGAGGCGCAGA
LOC_Os05g39640
OsAffx.15029.1.S1_at--959--3951Chr05:23189120..23189144 (25 bp)
CGGAGATGGCACATCGGCTCAAGGA
LOC_Os05g39640
OsAffx.15029.1.S1_at--168--8511Chr05:23189126..23189150 (25 bp)
TGGCACATCGGCTCAAGGAGACCGA
LOC_Os05g39640
OsAffx.15029.1.S1_at--827--1591Chr05:23189153..23189177 (25 bp)
AGCTGCAGAGTTGGGCCGCCACCGA
LOC_Os05g39640
OsAffx.15029.1.S1_at--87--4071Chr05:23189175..23189199 (25 bp)
CGAGGCACCCACCAAATCTGAGGAG
LOC_Os05g39640
OsAffx.15029.1.S1_at--718--931Chr05:23189177..23189201 (25 bp)
AGGCACCCACCAAATCTGAGGAGGA
LOC_Os05g39640
OsAffx.15029.1.S1_at--343--4571Chr05:23189211..23189235 (25 bp)
GCGCGTCCACCGCAAACTCGAGAAG
LOC_Os05g39640
OsAffx.15029.1.S1_at--196--4351Chr05:23189217..23189241 (25 bp)
CCACCGCAAACTCGAGAAGCTTCAT
LOC_Os05g39640
OsAffx.15029.1.S1_at--305--2391Chr05:23189224..23189248 (25 bp)
AAACTCGAGAAGCTTCATCGGCCTA
LOC_Os05g39640
OsAffx.15029.1.S1_at--1091--3731Chr05:23189227..23189251 (25 bp)
CTCGAGAAGCTTCATCGGCCTACTT
LOC_Os05g39640
OsAffx.15029.1.S1_at--916--5951Chr05:23189230..23189254 (25 bp)
GAGAAGCTTCATCGGCCTACTTCGC
LOC_Os05g39640
Target Sequence 
AGCCATGGGAAGGACGAGGCGCAGAGGGTGTGGGAGGCGGAGATGGCACATCGGCTCAAGGAGACCGAGGAGCTGCAGAG
TTGGGCCGCCACCGAGGCACCCACCAAATCTGAGGAGGAGAAGCGCAAGCGCGTCCACCGCAAACTCGAGAAGCTTCATC
GGCCTACTTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis